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Aliases for GC07M073340 Gene

Subcategory (RNA class) for GC07M073340 Gene

snRNA

Quality Score for this RNA gene is

2

Aliases for GC07M073340 Gene

No Aliases found

ORGUL Members for GC07M073340 Gene

No data available for External Ids for GC07M073340 Gene

Summaries for GC07M073340 Gene

GeneCards Summary for GC07M073340 Gene

GC07M073340 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC07M073340 Gene

  • U6_snRNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA.

Additional gene information for GC07M073340 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC07M073340 Gene

Genomics for GC07M073340 Gene

GeneHancer (GH) Regulatory Elements for GC07M073340 Gene

Promoters and enhancers for GC07M073340 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I073343 Enhancer 1 FANTOM5 ENCODE 0.8 -2.9 -2906 0.2 JUN MAX CEBPG FOSL1 ZNF335 ZNF766 CBFA2T2 NFE2 FOS ATF7 POM121 STAG3L3 MIR590 NSUN5P2 GTF2IRD2P1 BAZ1B METTL27 POM121B ELN TYW1B
GH07I073342 Enhancer 1 Ensembl ENCODE 0.8 -3.7 -3701 0.6 ELF3 ARID4B RAD21 SLC30A9 ZNF766 SCRT2 MIXL1 ZNF654 REST PPARG TYW1B GC07M073340 RNU6-1080P FKBP6 GC07M073332
GH07I073357 Enhancer 1.1 Ensembl ENCODE 0.4 -19.1 -19077 1.5 ATF1 FOXA2 ARID4B YY1 ATF7 RXRA SP5 KAT8 NFIL3 RCOR2 POM121B TYW1B GC07M073332 GC07M073340 RNU6-1080P FKBP6
GH07I073328 Promoter 0.5 EPDnew 0.4 +10.9 10856 0.1 TRIM50 FKBP6 GC07M073340 RNU6-1080P
GH07I073350 Enhancer 0.3 ENCODE 0.4 -12.1 -12058 2.1 NR2F2 POM121B TYW1B GC07M073340 RNU6-1080P GC07M073332 FKBP6
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC07M073340 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC07M073340 Gene

Genomic Locations for GC07M073340 Gene
chr7:73,339,093-73,339,200
(GRCh38/hg38)
Size:
108 bases
Orientation:
Minus strand

Genomic View for GC07M073340 Gene

Genes around GC07M073340 on UCSC Golden Path with GeneCards custom track

GC07M073340 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC07M073340 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC07M073340 Gene

Proteins for GC07M073340 Gene

Post-translational modifications for GC07M073340 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC07M073340 Gene

Domains & Families for GC07M073340 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC07M073340 Gene

Function for GC07M073340 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC07M073340 Gene

Localization for GC07M073340 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC07M073340 Gene

Pathways & Interactions for GC07M073340 Gene

SuperPathways for GC07M073340 Gene

No Data Available

Interacting Proteins for GC07M073340 Gene

Gene Ontology (GO) - Biological Process for GC07M073340 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC07M073340 Gene

Drugs & Compounds for GC07M073340 Gene

No Compound Related Data Available

Transcripts for GC07M073340 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC07M073340 Gene

No ASD Table

Relevant External Links for GC07M073340 Gene

GeneLoc Exon Structure for
GC07M073340

No data available for mRNA/cDNA for GC07M073340 Gene

Expression for GC07M073340 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC07M073340 Gene

Orthologs for GC07M073340 Gene

No data available for Orthologs and Evolution for GC07M073340 Gene

Paralogs for GC07M073340 Gene

No data available for Paralogs for GC07M073340 Gene

Variants for GC07M073340 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC07M073340 Gene

Disorders for GC07M073340 Gene

No disorders were found for GC07M073340 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC07M073340 Gene

Publications for GC07M073340 Gene

  1. NONCODE: an integrated knowledge database of non-coding RNAs. (PMID: 15608158) Liu C … Chen R (Nucleic acids research 2005) 1
  2. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  3. The RNA world of the nucleolus: two major families of small RNAs defined by different box elements with related functions. (PMID: 8797828) Balakin AG … Fournier MJ (Cell 1996) 1
  4. Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions. (PMID: 1960724) Orum H … Engberg J (Journal of molecular biology 1991) 1
  5. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

Products for GC07M073340 Gene

Sources for GC07M073340 Gene

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