Free for academic non-profit institutions. Other users need a Commercial license

Aliases for GC07M015454 Gene

Subcategory (RNA class) for GC07M015454 Gene

scaRNA

Quality Score for this RNA gene is

1

Aliases for GC07M015454 Gene

No Aliases found

ORGUL Members for GC07M015454 Gene

No data available for External Ids for GC07M015454 Gene

Summaries for GC07M015454 Gene

GeneCards Summary for GC07M015454 Gene

GC07M015454 is an RNA Gene, and is affiliated with the scaRNA class.

fRNAdb sequence ontologies for GC07M015454 Gene

  • snoRNA: A snoRNA (small nucleolar RNA) is any one of a class of small RNAs that are associated with the eukaryotic nucleus as components of small nucleolar ribonucleoproteins. They participate in the processing or modifications of many RNAs, mostly ribosomal RNAs (rRNAs) though snoRNAs are also known to target other classes of RNA, including spliceosomal RNAs, tRNAs, and mRNAs via a stretch of sequence that is complementary to a sequence in the targeted RNA.

Additional gene information for GC07M015454 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC07M015454 Gene

Genomics for GC07M015454 Gene

GeneHancer (GH) Regulatory Elements for GC07M015454 Gene

Promoters and enhancers for GC07M015454 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I015459 Enhancer 0.3 ENCODE 0.8 -4.1 -4143 0.5 POLR2A GC07M015455 GC07M015454 GC07M015516 AGMO GC07P015321
GH07I015475 Enhancer 0.6 ENCODE 0.3 -21.0 -21036 0.7 TAF1 REST ATF2 JUND ATF3 HNF4G CREB1 HNF4A ATF7 ZBTB33 GC07M015454 GC07M015455 GC07M015516 AGMO GC07P015321
GH07I015457 Enhancer 0.2 ENCODE 0.8 -3.3 -3317 1 GC07M015455 GC07M015454 GC07M015516 AGMO GC07P015321
GH07I015488 Enhancer 0.4 ENCODE 0.3 -34.5 -34535 2.6 CTBP1 PKNOX1 ARNT GC07M015454 GC07M015455 GC07M015516 AGMO GC07P015321
GH07I015407 Enhancer 0.5 ENCODE 0.2 +47.1 47117 0.2 ATF1 TEAD4 MAX CEBPG GABPA NR2C2 GC07M015455 GC07M015454 GC07P015321 AGMO
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC07M015454 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC07M015454 Gene

Genomic Locations for GC07M015454 Gene
chr7:15,454,950-15,455,188
(GRCh38/hg38)
Size:
239 bases
Orientation:
Minus strand

Genomic View for GC07M015454 Gene

Genes around GC07M015454 on UCSC Golden Path with GeneCards custom track

GC07M015454 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC07M015454 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC07M015454 Gene

Proteins for GC07M015454 Gene

Post-translational modifications for GC07M015454 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC07M015454 Gene

Domains & Families for GC07M015454 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC07M015454 Gene

Function for GC07M015454 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC07M015454 Gene

Localization for GC07M015454 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC07M015454 Gene

Pathways & Interactions for GC07M015454 Gene

SuperPathways for GC07M015454 Gene

No Data Available

Interacting Proteins for GC07M015454 Gene

Gene Ontology (GO) - Biological Process for GC07M015454 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC07M015454 Gene

Drugs & Compounds for GC07M015454 Gene

No Compound Related Data Available

Transcripts for GC07M015454 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC07M015454 Gene

No ASD Table

Relevant External Links for GC07M015454 Gene

GeneLoc Exon Structure for
GC07M015454

No data available for mRNA/cDNA for GC07M015454 Gene

Expression for GC07M015454 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC07M015454 Gene

Orthologs for GC07M015454 Gene

No data available for Orthologs and Evolution for GC07M015454 Gene

Paralogs for GC07M015454 Gene

No data available for Paralogs for GC07M015454 Gene

Variants for GC07M015454 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC07M015454 Gene

Disorders for GC07M015454 Gene

No disorders were found for GC07M015454 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC07M015454 Gene

Publications for GC07M015454 Gene

  1. NONCODE: an integrated knowledge database of non-coding RNAs. (PMID: 15608158) Liu C … Chen R (Nucleic acids research 2005) 1
  2. 4.5S RNA is encoded by hundreds of tandemly linked genes, has a short half-life, and is hydrogen bonded in vivo to poly(A)-terminated RNAs in the cytoplasm of cultured mouse cells. (PMID: 2431280) Schoeniger LO … Jelinek WR (Molecular and cellular biology 1986) 1

Products for GC07M015454 Gene

Sources for GC07M015454 Gene

Content
Loading form....