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Aliases for GC06P154966 Gene

Subcategory (RNA class) for GC06P154966 Gene

piRNA

Quality Score for this RNA gene is

6

Aliases for GC06P154966 Gene

No Aliases found

ORGUL Members for GC06P154966 Gene

No data available for External Ids for GC06P154966 Gene

Summaries for GC06P154966 Gene

GeneCards Summary for GC06P154966 Gene

GC06P154966 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for GC06P154966 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

View fRNAdb secondary structures for GC06P154966

Additional gene information for GC06P154966 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC06P154966 Gene

Genomics for GC06P154966 Gene

GeneHancer (GH) Regulatory Elements for GC06P154966 Gene

Promoters and enhancers for GC06P154966 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I154960 Enhancer 1.1 Ensembl ENCODE 0.8 -5.0 -4961 3.5 FOXA2 ZFP64 DMAP1 ZNF48 ETS1 FOS MIER2 REST PPARG KAT8 ENSG00000238963 GC06P154966 GC06P154934 TIAM2
GH06I154994 Promoter/Enhancer 1.3 Ensembl ENCODE 0.3 +28.9 28923 1.8 KLF17 MZF1 SIN3A ZNF2 ZNF335 GLIS2 EGR2 ZNF202 SP3 ZNF398 SCAF8 ENSG00000238963 LOC100421330 GC06P154966 GC06P154934 TIAM2
GH06I154951 Enhancer 0.8 ENCODE 0.4 -15.0 -15044 1.4 HDAC1 LEF1 E4F1 CTBP1 ZNF316 POLR2A FOS NFE2 ETV6 MAFK GC06P154934 GC06P154966 TIAM2
GH06I154980 Enhancer 0.7 ENCODE 0.4 +14.6 14646 1.7 ELF3 TFAP4 FOXA2 BATF KMT2B RELA POLR2A IKZF2 MIXL1 SOX5 SCAF8 GC06P154966 LOC100421330 GC06P154934 TIAM2
GH06I154996 Enhancer 0.6 ENCODE 0.3 +31.3 31292 2.2 SOX13 PKNOX1 ZNF362 FOXA2 ZNF384 OSR2 ZFHX2 SCRT2 HNF4A ZBTB17 ENSG00000238963 LOC100421330 GC06P154966 GC06P154934 TIAM2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC06P154966 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC06P154966 Gene

Genomic Locations for GC06P154966 Gene
chr6:154,966,764-154,966,798
(GRCh38/hg38)
Size:
35 bases
Orientation:
Plus strand

Genomic View for GC06P154966 Gene

Genes around GC06P154966 on UCSC Golden Path with GeneCards custom track

GC06P154966 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC06P154966 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC06P154966 Gene

ORGUL Member Location for GC06P154966 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC06P154966 Gene

Proteins for GC06P154966 Gene

Post-translational modifications for GC06P154966 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC06P154966 Gene

Domains & Families for GC06P154966 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC06P154966 Gene

Function for GC06P154966 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC06P154966 Gene

Localization for GC06P154966 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC06P154966 Gene

Pathways & Interactions for GC06P154966 Gene

SuperPathways for GC06P154966 Gene

No Data Available

Interacting Proteins for GC06P154966 Gene

Gene Ontology (GO) - Biological Process for GC06P154966 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC06P154966 Gene

Drugs & Compounds for GC06P154966 Gene

No Compound Related Data Available

Transcripts for GC06P154966 Gene

fRNAdb Secondary structures for GC06P154966 Gene

  • FR386464
  • FR081499

Alternative Splicing Database (ASD) splice patterns (SP) for GC06P154966 Gene

No ASD Table

Relevant External Links for GC06P154966 Gene

GeneLoc Exon Structure for
GC06P154966

No data available for mRNA/cDNA for GC06P154966 Gene

Expression for GC06P154966 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC06P154966 Gene

Orthologs for GC06P154966 Gene

No data available for Orthologs and Evolution for GC06P154966 Gene

Paralogs for GC06P154966 Gene

No data available for Paralogs for GC06P154966 Gene

Variants for GC06P154966 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC06P154966 Gene

Disorders for GC06P154966 Gene

No disorders were found for GC06P154966 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC06P154966 Gene

Publications for GC06P154966 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for GC06P154966 Gene

Sources for GC06P154966 Gene

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