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Aliases for GC06P148279 Gene

Subcategory (RNA class) for GC06P148279 Gene

snRNA

Quality Score for this RNA gene is

2

Aliases for GC06P148279 Gene

No Aliases found

ORGUL Members for GC06P148279 Gene

No data available for External Ids for GC06P148279 Gene

Summaries for GC06P148279 Gene

GeneCards Summary for GC06P148279 Gene

GC06P148279 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC06P148279 Gene

  • U6_snRNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA.

Additional gene information for GC06P148279 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC06P148279 Gene

Genomics for GC06P148279 Gene

GeneHancer (GH) Regulatory Elements for GC06P148279 Gene

Promoters and enhancers for GC06P148279 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I148266 Enhancer 1 FANTOM5 Ensembl ENCODE 0.4 -10.5 -10507 2.7 SP1 JUND JUN FOSL2 FOS UST GC06P148279 ENSG00000224658 SASH1
GH06I148271 Enhancer 0.7 Ensembl ENCODE 0.4 -6.5 -6470 2.1 JUND POLR2A JUN FOS GC06P148279 ENSG00000224658 SASH1
GH06I148202 Enhancer 1.2 FANTOM5 Ensembl ENCODE 0.2 -74.8 -74804 1.9 ATF1 MAX EBF1 BMI1 KLF5 RELA POLR2A NFATC1 ATF7 ETV6 SASH1 GC06P148279
GH06I148243 Enhancer 0.8 FANTOM5 Ensembl ENCODE 0.3 -33.9 -33935 2.2 ZSCAN4 MNT RNU6-1222P SASH1 GC06P148279 ENSG00000224658
GH06I148238 Enhancer 0.6 Ensembl ENCODE 0.3 -38.2 -38234 3 ATF7 KLF4 ATF2 RNU6-1222P SASH1 UST-AS1 GC06P148279 ENSG00000224658
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC06P148279 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC06P148279 Gene

Genomic Locations for GC06P148279 Gene
chr6:148,278,671-148,278,778
(GRCh38/hg38)
Size:
108 bases
Orientation:
Plus strand

Genomic View for GC06P148279 Gene

Genes around GC06P148279 on UCSC Golden Path with GeneCards custom track

GC06P148279 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC06P148279 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC06P148279 Gene

Proteins for GC06P148279 Gene

Post-translational modifications for GC06P148279 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC06P148279 Gene

Domains & Families for GC06P148279 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC06P148279 Gene

Function for GC06P148279 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC06P148279 Gene

Localization for GC06P148279 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC06P148279 Gene

Pathways & Interactions for GC06P148279 Gene

SuperPathways for GC06P148279 Gene

No Data Available

Interacting Proteins for GC06P148279 Gene

Gene Ontology (GO) - Biological Process for GC06P148279 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC06P148279 Gene

Drugs & Compounds for GC06P148279 Gene

No Compound Related Data Available

Transcripts for GC06P148279 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC06P148279 Gene

No ASD Table

Relevant External Links for GC06P148279 Gene

GeneLoc Exon Structure for
GC06P148279

No data available for mRNA/cDNA for GC06P148279 Gene

Expression for GC06P148279 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC06P148279 Gene

Orthologs for GC06P148279 Gene

No data available for Orthologs and Evolution for GC06P148279 Gene

Paralogs for GC06P148279 Gene

No data available for Paralogs for GC06P148279 Gene

Variants for GC06P148279 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC06P148279 Gene

Disorders for GC06P148279 Gene

No disorders were found for GC06P148279 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC06P148279 Gene

Publications for GC06P148279 Gene

  1. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  2. Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions. (PMID: 1960724) Orum H … Engberg J (Journal of molecular biology 1991) 1
  3. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

Products for GC06P148279 Gene

Sources for GC06P148279 Gene

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