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Aliases for GC06P141986 Gene

Subcategory (RNA class) for GC06P141986 Gene

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Quality Score for this RNA gene is

10.4

Aliases for GC06P141986 Gene

No Aliases found

ORGUL Members for GC06P141986 Gene

No data available for External Ids for GC06P141986 Gene

Summaries for GC06P141986 Gene

GeneCards Summary for GC06P141986 Gene

GC06P141986 is an RNA Gene, and is affiliated with the undefined RNA class.

fRNAdb sequence ontologies for GC06P141986 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for GC06P141986

Additional gene information for GC06P141986 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC06P141986 Gene

Genomics for GC06P141986 Gene

GeneHancer (GH) Regulatory Elements for GC06P141986 Gene

Promoters and enhancers for GC06P141986 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I141988 Enhancer 0.9 Ensembl ENCODE 0.8 +3.1 3054 1 ELF3 CTCF MAX SIN3A RAD21 YY1 CC2D1A HNF4G ZNF143 SMC3 GC06P141986 LOC105378031
GH06I142012 Enhancer 1.1 FANTOM5 Ensembl ENCODE 0.3 +27.7 27665 3.6 STAT1 JUN JUNB BATF EP300 ATF2 SP1 JUND POLR2A BCL11A LOC105378031 GC06P141986
GH06I142029 Enhancer 1 Ensembl ENCODE 0.3 +43.5 43537 1.4 HDAC1 MEIS2 PKNOX1 RB1 ETV1 SIN3A E4F1 E2F1 CC2D1A CTBP1 LOC105378031 GC06P141986
GH06I142009 Enhancer 0.8 ENCODE 0.3 +23.5 23464 1.5 HDAC1 ATF1 PKNOX1 FEZF1 CHAMP1 TCF12 PHF21A NFIC IKZF1 PBX2 LOC105378031 GC06P141986
GH06I141969 Enhancer 0.5 FANTOM5 0.4 -17.0 -16998 0.1 JUND ZNF366 JUN STAT3 VTA1 GC06P141986 GC06M141923 LOC105378031
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC06P141986 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC06P141986 Gene

Genomic Locations for GC06P141986 Gene
chr6:141,986,410-141,986,529
(GRCh38/hg38)
Size:
120 bases
Orientation:
Plus strand

Genomic View for GC06P141986 Gene

Genes around GC06P141986 on UCSC Golden Path with GeneCards custom track

GC06P141986 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC06P141986 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC06P141986 Gene

ORGUL Member Location for GC06P141986 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC06P141986 Gene

Proteins for GC06P141986 Gene

Post-translational modifications for GC06P141986 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC06P141986 Gene

Domains & Families for GC06P141986 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC06P141986 Gene

Function for GC06P141986 Gene

Animal Model Products

miRNA for GC06P141986 Gene

miRTarBase miRNAs that target GC06P141986

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for GC06P141986 Gene

Localization for GC06P141986 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC06P141986 Gene

Pathways & Interactions for GC06P141986 Gene

SuperPathways for GC06P141986 Gene

No Data Available

Interacting Proteins for GC06P141986 Gene

Gene Ontology (GO) - Biological Process for GC06P141986 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC06P141986 Gene

Drugs & Compounds for GC06P141986 Gene

No Compound Related Data Available

Transcripts for GC06P141986 Gene

fRNAdb Secondary structures for GC06P141986 Gene

  • FR066664
  • FR368041

Alternative Splicing Database (ASD) splice patterns (SP) for GC06P141986 Gene

No ASD Table

Relevant External Links for GC06P141986 Gene

GeneLoc Exon Structure for
GC06P141986

No data available for mRNA/cDNA for GC06P141986 Gene

Expression for GC06P141986 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC06P141986 Gene

Orthologs for GC06P141986 Gene

No data available for Orthologs and Evolution for GC06P141986 Gene

Paralogs for GC06P141986 Gene

No data available for Paralogs for GC06P141986 Gene

Variants for GC06P141986 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC06P141986 Gene

Disorders for GC06P141986 Gene

No disorders were found for GC06P141986 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC06P141986 Gene

Publications for GC06P141986 Gene

  1. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen JS … Haussler D (PLoS computational biology 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  3. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S … Stadler PF (Nature biotechnology 2005) 1

Products for GC06P141986 Gene

Sources for GC06P141986 Gene

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