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Aliases for GC06P132821 Gene

Subcategory (RNA class) for GC06P132821 Gene

snoRNA

Quality Score for this RNA gene is

14

Aliases for GC06P132821 Gene

No Aliases found

ORGUL Members for GC06P132821 Gene

No data available for External Ids for GC06P132821 Gene

Summaries for GC06P132821 Gene

GeneCards Summary for GC06P132821 Gene

GC06P132821 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC06P132821 Gene

  • C_D_box_snoRNA: Most box C/D snoRNAs also contain long (>10 nt) sequences complementary to rRNA. Boxes C and D, as well as boxes C' and D', are usually located in close proximity, and form a structure known as the box C/D motif. This motif is important for snoRNA stability, processing, nucleolar targeting and function. A small number of box C/D snoRNAs are involved in rRNA processing; most, however, are known or predicted to serve as guide RNAs in ribose methylation of rRNA. Targeting involves direct base pairing of the snoRNA at the rRNA site to be modified and selection of a rRNA nucleotide a fixed distance from box D or D'.

Additional gene information for GC06P132821 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC06P132821 Gene

Genomics for GC06P132821 Gene

GeneHancer (GH) Regulatory Elements for GC06P132821 Gene

Promoters and enhancers for GC06P132821 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I132812 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE 0.8 -2.2 -2220 4.9 MLX ZFP64 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 RPS12 GC06P132818 SNORD101 SNORA33 SLC18B1 VNN1 GC06P132821 PIR38370 SNORD100
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC06P132821 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC06P132821 Gene

Genomic Locations for GC06P132821 Gene
chr6:132,816,801-132,816,877
(GRCh38/hg38)
Size:
77 bases
Orientation:
Plus strand

Genomic View for GC06P132821 Gene

Genes around GC06P132821 on UCSC Golden Path with GeneCards custom track

GC06P132821 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC06P132821 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC06P132821 Gene

Proteins for GC06P132821 Gene

Post-translational modifications for GC06P132821 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC06P132821 Gene

Domains & Families for GC06P132821 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC06P132821 Gene

Function for GC06P132821 Gene

Animal Model Products

miRNA for GC06P132821 Gene

miRTarBase miRNAs that target GC06P132821

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for GC06P132821 Gene

Localization for GC06P132821 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC06P132821 Gene

Pathways & Interactions for GC06P132821 Gene

SuperPathways for GC06P132821 Gene

No Data Available

Interacting Proteins for GC06P132821 Gene

Gene Ontology (GO) - Biological Process for GC06P132821 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC06P132821 Gene

Drugs & Compounds for GC06P132821 Gene

No Compound Related Data Available

Transcripts for GC06P132821 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC06P132821 Gene

No ASD Table

Relevant External Links for GC06P132821 Gene

GeneLoc Exon Structure for
GC06P132821

No data available for mRNA/cDNA for GC06P132821 Gene

Expression for GC06P132821 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC06P132821 Gene

Orthologs for GC06P132821 Gene

No data available for Orthologs and Evolution for GC06P132821 Gene

Paralogs for GC06P132821 Gene

No data available for Paralogs for GC06P132821 Gene

Variants for GC06P132821 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC06P132821 Gene

Disorders for GC06P132821 Gene

No disorders were found for GC06P132821 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC06P132821 Gene

Publications for GC06P132821 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  3. Purified box C/D snoRNPs are able to reproduce site-specific 2'-O-methylation of target RNA in vitro. (PMID: 12215523) Galardi S … Bozzoni I (Molecular and cellular biology 2002) 1
  4. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. (PMID: 11387227) Hüttenhofer A … Brosius J (The EMBO journal 2001) 1

Products for GC06P132821 Gene

Sources for GC06P132821 Gene

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