Free for academic non-profit institutions. Other users need a Commercial license

Aliases for GC06P131821 Gene

Subcategory (RNA class) for GC06P131821 Gene


Quality Score for this RNA gene is


Aliases for GC06P131821 Gene

No Aliases found

ORGUL Members for GC06P131821 Gene

No data available for External Ids for GC06P131821 Gene

Summaries for GC06P131821 Gene

GeneCards Summary for GC06P131821 Gene

GC06P131821 is an RNA Gene, and is affiliated with the 7SK RNA class.

fRNAdb sequence ontologies for GC06P131821 Gene - the ORGUL cluster for this gene includes several descriptions:

  • snRNA: A small nuclear RNA molecule involved in pre-mRNA splicing and processing.

  • 7SK RNA: 7SK was discovered as an abundant small nuclear RNA in the mid-70s but a possible function has only recently been suggested [1]. Two independent studies have found that 7SK RNA binds the CDK9/cyclin T complex (known as elongation factor P-TEFb). P-TEFb activates transcription by phosphorylating the C-terminal domain of RNA polymerase II. This process is negatively regulated by the 7SK RNP. The secondary structure of 7SK RNA shown here was proposed by Wasserman and Steitz on the basis of chemical modification and enzymatic cleavage experiments [2]. This family contains a number of annotated pseudogenes and 7SK derived repeats. The threshold is artificially high to minimise the pseudogene count.

View fRNAdb secondary structures for GC06P131821

Additional gene information for GC06P131821 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC06P131821 Gene

Genomics for GC06P131821 Gene

GeneHancer (GH) Regulatory Elements for GC06P131821 Gene

Promoters and enhancers for GC06P131821 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I131819 Enhancer 0.6 ENCODE 550.8 -0.3 -259 1.1 PKNOX1 RFX1 ZNF189 TEAD4 TAL1 CBFA2T3 REST ATF2 ZNF7 CTBP1 GC06M131821 GC06P131821 SELENOKP2 RN7SKP245 LOC100421775 ENPP1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC06P131821 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC06P131821 Gene

Genomic Locations for GC06P131821 Gene
321 bases
Plus strand

Genomic View for GC06P131821 Gene

Genes around GC06P131821 on UCSC Golden Path with GeneCards custom track

GC06P131821 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC06P131821 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC06P131821 Gene

ORGUL Member Location for GC06P131821 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC06P131821 Gene

Proteins for GC06P131821 Gene

Post-translational modifications for GC06P131821 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC06P131821 Gene

Domains & Families for GC06P131821 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC06P131821 Gene

Function for GC06P131821 Gene

Animal Model Products

miRNA for GC06P131821 Gene

miRTarBase miRNAs that target GC06P131821

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for GC06P131821 Gene

Localization for GC06P131821 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC06P131821 Gene

Pathways & Interactions for GC06P131821 Gene

SuperPathways for GC06P131821 Gene

No Data Available

Interacting Proteins for GC06P131821 Gene

Gene Ontology (GO) - Biological Process for GC06P131821 Gene


No data available for Pathways by source and SIGNOR curated interactions for GC06P131821 Gene

Drugs & Compounds for GC06P131821 Gene

No Compound Related Data Available

Transcripts for GC06P131821 Gene

fRNAdb Secondary structures for GC06P131821 Gene

  • FR102598

Alternative Splicing Database (ASD) splice patterns (SP) for GC06P131821 Gene

No ASD Table

Relevant External Links for GC06P131821 Gene

GeneLoc Exon Structure for

No data available for mRNA/cDNA for GC06P131821 Gene

Expression for GC06P131821 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC06P131821 Gene

Orthologs for GC06P131821 Gene

No data available for Orthologs and Evolution for GC06P131821 Gene

Paralogs for GC06P131821 Gene

No data available for Paralogs for GC06P131821 Gene

Variants for GC06P131821 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC06P131821 Gene

Disorders for GC06P131821 Gene

No disorders were found for GC06P131821 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC06P131821 Gene

Publications for GC06P131821 Gene

  1. Transcription: surprising role for an elusive small nuclear RNA. (PMID: 11864590) Blencowe BJ (Current biology : CB 2002) 1
  2. Structural analyses of the 7SK ribonucleoprotein (RNP), the most abundant human small RNP of unknown function. (PMID: 1646389) Wassarman DA … Steitz JA (Molecular and cellular biology 1991) 1

Products for GC06P131821 Gene

Sources for GC06P131821 Gene

Loading form....