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Aliases for GC06P088328 Gene

Subcategory (RNA class) for GC06P088328 Gene

lncRNA

Quality Score for this RNA gene is

12.2

Aliases for GC06P088328 Gene

No Aliases found

ORGUL Members for GC06P088328 Gene

No data available for External Ids for GC06P088328 Gene

Summaries for GC06P088328 Gene

GeneCards Summary for GC06P088328 Gene

GC06P088328 is an RNA Gene, and is affiliated with the lncRNA class.

fRNAdb sequence ontologies for GC06P088328 Gene - the ORGUL cluster for this gene includes several descriptions:

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

  • antisense_RNA: Antisense RNA is RNA that is transcribed from the coding, rather than the template, strand of DNA. It is therefore complementary to mRNA.

View fRNAdb secondary structures for GC06P088328

Additional gene information for GC06P088328 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC06P088328 Gene

Genomics for GC06P088328 Gene

GeneHancer (GH) Regulatory Elements for GC06P088328 Gene

Promoters and enhancers for GC06P088328 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I088359 Enhancer 0.6 ENCODE 0.3 +31.4 31423 1.6 CTCF JUN HLF NFIL3 SP1 JUND HNF4A FOSL2 NFE2 CNR1 ACTBP8 GC06P088328 ENSG00000234426 LOC105377885
GH06I088379 Enhancer 0.8 FANTOM5 ENCODE 0.2 +51.4 51427 1.3 FOSL1 JUND JUN CEBPB NFE2 FOSL2 FOS ACTBP8 CNR1 ENSG00000234426 GC06P088328 LOC105377885
GH06I088368 Enhancer 0.4 ENCODE 0.3 +39.4 39380 0.2 JUND FOSL2 GC06P088328 ENSG00000234426 LOC105377885
GH06I088376 Enhancer 0.5 ENCODE 0.2 +47.9 47868 0.9 JUND POLR2A JUN REST NR2F2 CNR1 ACTBP8 ENSG00000234426 GC06P088328 LOC105377885
GH06I088374 Enhancer 0.2 FANTOM5 0.2 +45.5 45495 0.2 ENSG00000234426 GC06P088328 LOC105377885
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC06P088328 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC06P088328 Gene

Genomic Locations for GC06P088328 Gene
chr6:88,328,907-88,330,612
(GRCh38/hg38)
Size:
1,706 bases
Orientation:
Plus strand

Genomic View for GC06P088328 Gene

Genes around GC06P088328 on UCSC Golden Path with GeneCards custom track

GC06P088328 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC06P088328 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC06P088328 Gene

ORGUL Member Location for GC06P088328 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC06P088328 Gene

Proteins for GC06P088328 Gene

Post-translational modifications for GC06P088328 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC06P088328 Gene

Domains & Families for GC06P088328 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC06P088328 Gene

Function for GC06P088328 Gene

Animal Model Products

miRNA for GC06P088328 Gene

miRTarBase miRNAs that target GC06P088328

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for GC06P088328 Gene

Localization for GC06P088328 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC06P088328 Gene

Pathways & Interactions for GC06P088328 Gene

SuperPathways for GC06P088328 Gene

No Data Available

Interacting Proteins for GC06P088328 Gene

Gene Ontology (GO) - Biological Process for GC06P088328 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC06P088328 Gene

Drugs & Compounds for GC06P088328 Gene

No Compound Related Data Available

Transcripts for GC06P088328 Gene

fRNAdb Secondary structures for GC06P088328 Gene

  • FR075046

Alternative Splicing Database (ASD) splice patterns (SP) for GC06P088328 Gene

No ASD Table

Relevant External Links for GC06P088328 Gene

GeneLoc Exon Structure for
GC06P088328

No data available for mRNA/cDNA for GC06P088328 Gene

Expression for GC06P088328 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC06P088328 Gene

Orthologs for GC06P088328 Gene

No data available for Orthologs and Evolution for GC06P088328 Gene

Paralogs for GC06P088328 Gene

No data available for Paralogs for GC06P088328 Gene

Variants for GC06P088328 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC06P088328 Gene

Disorders for GC06P088328 Gene

No disorders were found for GC06P088328 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC06P088328 Gene

Publications for GC06P088328 Gene

  1. The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts. (PMID: 18089548) Genome Information Integration Project And H-Invitational 2 … Gojobori T (Nucleic acids research 2008) 1
  2. Identification and characterization of human non-coding RNAs with tissue-specific expression. (PMID: 17451645) Sasaki YT … Hirose T (Biochemical and biophysical research communications 2007) 1
  3. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen JS … Haussler D (PLoS computational biology 2006) 1
  4. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  5. Integrative annotation of 21,037 human genes validated by full-length cDNA clones. (PMID: 15103394) Imanishi T … Sugano S (PLoS biology 2004) 1

Products for GC06P088328 Gene

Sources for GC06P088328 Gene

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