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Aliases for GC06P049919 Gene

Subcategory (RNA class) for GC06P049919 Gene

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Quality Score for this RNA gene is

10.4

Aliases for GC06P049919 Gene

No Aliases found

ORGUL Members for GC06P049919 Gene

No data available for External Ids for GC06P049919 Gene

Summaries for GC06P049919 Gene

GeneCards Summary for GC06P049919 Gene

GC06P049919 is an RNA Gene, and is affiliated with the undefined RNA class.

fRNAdb sequence ontologies for GC06P049919 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for GC06P049919

Additional gene information for GC06P049919 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC06P049919 Gene

Genomics for GC06P049919 Gene

GeneHancer (GH) Regulatory Elements for GC06P049919 Gene

Promoters and enhancers for GC06P049919 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I049918 Enhancer 0.4 ENCODE 550.8 -0.3 -301 0.2 BACH1 EZH2 GC06P049919 CRISP1
GH06I049888 Enhancer 1 ENCODE 0.3 -30.4 -30421 0.2 PKNOX1 ATF1 ARNT NCOA2 TCF12 ZNF766 GATA2 E2F8 ATF7 NCOA1 CRISP1 GC06P049919
GH06I049939 Enhancer 0.9 ENCODE 0.3 +20.7 20737 1.2 PKNOX1 ATF1 ARNT YY1 ZNF766 E2F8 ATF7 NCOA1 REST ZNF592 DEFB113 DEFB133 GC06P049919
GH06I049949 Promoter 0.7 EPDnew 0.3 +30.1 30135 0.1 FOSL1 HMBOX1 NR2C2 DEFB133 GC06P049919
GH06I049908 Enhancer 0.4 ENCODE 0.4 -9.8 -9811 1.7 ZNF316 MAFK GLYATL3 MUT GC06P049919 CRISP1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC06P049919 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC06P049919 Gene

Genomic Locations for GC06P049919 Gene
chr6:49,919,304-49,919,501
(GRCh38/hg38)
Size:
198 bases
Orientation:
Plus strand

Genomic View for GC06P049919 Gene

Genes around GC06P049919 on UCSC Golden Path with GeneCards custom track

GC06P049919 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC06P049919 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC06P049919 Gene

ORGUL Member Location for GC06P049919 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC06P049919 Gene

Proteins for GC06P049919 Gene

Post-translational modifications for GC06P049919 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC06P049919 Gene

Domains & Families for GC06P049919 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC06P049919 Gene

Function for GC06P049919 Gene

Animal Model Products

miRNA for GC06P049919 Gene

miRTarBase miRNAs that target GC06P049919

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for GC06P049919 Gene

Localization for GC06P049919 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC06P049919 Gene

Pathways & Interactions for GC06P049919 Gene

SuperPathways for GC06P049919 Gene

No Data Available

Interacting Proteins for GC06P049919 Gene

Gene Ontology (GO) - Biological Process for GC06P049919 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC06P049919 Gene

Drugs & Compounds for GC06P049919 Gene

No Compound Related Data Available

Transcripts for GC06P049919 Gene

fRNAdb Secondary structures for GC06P049919 Gene

  • FR395664

Alternative Splicing Database (ASD) splice patterns (SP) for GC06P049919 Gene

No ASD Table

Relevant External Links for GC06P049919 Gene

GeneLoc Exon Structure for
GC06P049919

No data available for mRNA/cDNA for GC06P049919 Gene

Expression for GC06P049919 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC06P049919 Gene

Orthologs for GC06P049919 Gene

No data available for Orthologs and Evolution for GC06P049919 Gene

Paralogs for GC06P049919 Gene

No data available for Paralogs for GC06P049919 Gene

Variants for GC06P049919 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC06P049919 Gene

Disorders for GC06P049919 Gene

No disorders were found for GC06P049919 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC06P049919 Gene

Publications for GC06P049919 Gene

  1. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen JS … Haussler D (PLoS computational biology 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  3. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S … Stadler PF (Nature biotechnology 2005) 1

Products for GC06P049919 Gene

Sources for GC06P049919 Gene

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