Free for academic non-profit institutions. Other users need a Commercial license

Aliases for GC06M056228 Gene

Subcategory (RNA class) for GC06M056228 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for GC06M056228 Gene

No Aliases found

ORGUL Members for GC06M056228 Gene

No data available for External Ids for GC06M056228 Gene

Summaries for GC06M056228 Gene

GeneCards Summary for GC06M056228 Gene

GC06M056228 is an RNA Gene, and is affiliated with the lncRNA class.

fRNAdb sequence ontologies for GC06M056228 Gene

  • antisense_RNA: Antisense RNA is RNA that is transcribed from the coding, rather than the template, strand of DNA. It is therefore complementary to mRNA.

View fRNAdb secondary structures for GC06M056228

Additional gene information for GC06M056228 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC06M056228 Gene

Genomics for GC06M056228 Gene

GeneHancer (GH) Regulatory Elements for GC06M056228 Gene

Promoters and enhancers for GC06M056228 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J056231 Enhancer 0.5 ENCODE 650.7 -0.7 -655 0.2 JUN NFE2 MAFK NFE2L2 GC06M056228 COL21A1 GC06P056252
GH06J056232 Enhancer 0.2 ENCODE 650.7 -1.9 -1905 1.3 GC06M056228 GC06P056252 COL21A1
GH06J056245 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE 0.4 -16.2 -16159 2.5 CTCF ZNF768 KLF1 ZNF777 SIN3A ZIC2 ZNF335 ZFHX2 POLR2A PATZ1 COL21A1 GC06P056252 GC06M056228
GH06J056224 Enhancer 0.6 ENCODE 0.4 +6.5 6495 0.2 SP1 ATF3 GLIS1 ZNF266 MZF1 REST FOSL2 ZNF843 GC06M056228 COL21A1 LOC105375100
GH06J056220 Enhancer 0.6 ENCODE 0.4 +10.5 10455 0.1 SMARCE1 PKNOX1 DPF2 FEZF1 ZNF843 FOXA1 SP1 ZNF217 CTBP1 GATA3 GC06M056228 COL21A1 LOC105375100
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC06M056228 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC06M056228 Gene

Genomic Locations for GC06M056228 Gene
chr6:56,228,344-56,230,683
(GRCh38/hg38)
Size:
2,340 bases
Orientation:
Minus strand

Genomic View for GC06M056228 Gene

Genes around GC06M056228 on UCSC Golden Path with GeneCards custom track

GC06M056228 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC06M056228 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC06M056228 Gene

ORGUL Member Location for GC06M056228 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC06M056228 Gene

Proteins for GC06M056228 Gene

Post-translational modifications for GC06M056228 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC06M056228 Gene

Domains & Families for GC06M056228 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC06M056228 Gene

Function for GC06M056228 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC06M056228 Gene

Localization for GC06M056228 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC06M056228 Gene

Pathways & Interactions for GC06M056228 Gene

SuperPathways for GC06M056228 Gene

No Data Available

Interacting Proteins for GC06M056228 Gene

Gene Ontology (GO) - Biological Process for GC06M056228 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC06M056228 Gene

Drugs & Compounds for GC06M056228 Gene

No Compound Related Data Available

Transcripts for GC06M056228 Gene

fRNAdb Secondary structures for GC06M056228 Gene

  • FR144114

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for GC06M056228 Gene

No ASD Table

Relevant External Links for GC06M056228 Gene

GeneLoc Exon Structure for
GC06M056228

No data available for mRNA/cDNA for GC06M056228 Gene

Expression for GC06M056228 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC06M056228 Gene

Orthologs for GC06M056228 Gene

No data available for Orthologs and Evolution for GC06M056228 Gene

Paralogs for GC06M056228 Gene

No data available for Paralogs for GC06M056228 Gene

Variants for GC06M056228 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC06M056228 Gene

Disorders for GC06M056228 Gene

No disorders were found for GC06M056228 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC06M056228 Gene

Publications for GC06M056228 Gene

  1. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for GC06M056228 Gene

Sources for GC06M056228 Gene

Content
Loading form....