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Aliases for GC06M053154 Gene

Subcategory (RNA class) for GC06M053154 Gene

snRNA

Quality Score for this RNA gene is

2

Aliases for GC06M053154 Gene

No Aliases found

ORGUL Members for GC06M053154 Gene

No data available for External Ids for GC06M053154 Gene

Summaries for GC06M053154 Gene

GeneCards Summary for GC06M053154 Gene

GC06M053154 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC06M053154 Gene

  • U6_snRNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA.

Additional gene information for GC06M053154 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC06M053154 Gene

Genomics for GC06M053154 Gene

GeneHancer (GH) Regulatory Elements for GC06M053154 Gene

Promoters and enhancers for GC06M053154 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I053171 Enhancer 1.4 FANTOM5 ENCODE dbSUPER 0.4 -18.2 -18213 0.3 HDGF MLX ARID4B SIN3A ZNF2 IRF4 BRCA1 ZNF48 ZNF213 ARID2 ENSG00000218713 GC06M053154 RNU6-464P SOD1P1
GH06I053187 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.3 -34.5 -34506 1.2 ZNF384 RAD21 ZFHX2 ZNF316 EGR1 ETV6 MAFK EGR2 ZNF362 RNF2 ENSG00000218713 SOD1P1 GC06M053154 RNU6-464P
GH06I053192 Enhancer 1 Ensembl ENCODE dbSUPER 0.3 -38.9 -38901 0.4 ZNF263 MAFG RAD21 ZNF316 MAFF PRDM10 HNF4A PRDM1 ENSG00000218713 SOD1P1 RNU6-464P GC06M053154
GH06I053148 Promoter 0.7 EPDnew 0.4 +5.0 5048 0.1 NFIC NFIA ZNF189 GCM1 GC06M053154 RNU6-464P
GH06I053180 Enhancer 0.9 Ensembl dbSUPER 0.3 -26.4 -26403 0.6 TFAP4 SMAD1 NFIB MZF1 ZNF195 ZBTB40 ZNF335 LCORL GATA3 ZBTB20 EFHC1 MCM3 SOD1P1 GC06M053154 RNU6-464P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC06M053154 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC06M053154 Gene

Genomic Locations for GC06M053154 Gene
chr6:53,153,794-53,153,898
(GRCh38/hg38)
Size:
105 bases
Orientation:
Minus strand

Genomic View for GC06M053154 Gene

Genes around GC06M053154 on UCSC Golden Path with GeneCards custom track

GC06M053154 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC06M053154 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC06M053154 Gene

Proteins for GC06M053154 Gene

Post-translational modifications for GC06M053154 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC06M053154 Gene

Domains & Families for GC06M053154 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC06M053154 Gene

Function for GC06M053154 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC06M053154 Gene

Localization for GC06M053154 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC06M053154 Gene

Pathways & Interactions for GC06M053154 Gene

SuperPathways for GC06M053154 Gene

No Data Available

Interacting Proteins for GC06M053154 Gene

Gene Ontology (GO) - Biological Process for GC06M053154 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC06M053154 Gene

Drugs & Compounds for GC06M053154 Gene

No Compound Related Data Available

Transcripts for GC06M053154 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC06M053154 Gene

No ASD Table

Relevant External Links for GC06M053154 Gene

GeneLoc Exon Structure for
GC06M053154

No data available for mRNA/cDNA for GC06M053154 Gene

Expression for GC06M053154 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC06M053154 Gene

Orthologs for GC06M053154 Gene

No data available for Orthologs and Evolution for GC06M053154 Gene

Paralogs for GC06M053154 Gene

No data available for Paralogs for GC06M053154 Gene

Variants for GC06M053154 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC06M053154 Gene

Disorders for GC06M053154 Gene

No disorders were found for GC06M053154 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC06M053154 Gene

Publications for GC06M053154 Gene

  1. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  2. Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions. (PMID: 1960724) Orum H … Engberg J (Journal of molecular biology 1991) 1
  3. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

Products for GC06M053154 Gene

Sources for GC06M053154 Gene

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