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Aliases for GC06M042412 Gene

Subcategory (RNA class) for GC06M042412 Gene

snoRNA

Quality Score for this RNA gene is

2

Aliases for GC06M042412 Gene

No Aliases found

ORGUL Members for GC06M042412 Gene

No data available for External Ids for GC06M042412 Gene

Summaries for GC06M042412 Gene

GeneCards Summary for GC06M042412 Gene

GC06M042412 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC06M042412 Gene

  • U3_snoRNA: U3 snoRNA is a member of the box C/D class of small nucleolar RNAs. The U3 snoRNA secondary structure is characterised by a small 5' domain (with boxes A and A'), and a larger 3' domain (with boxes B, C, C', and D), the two domains being linked by a single-stranded hinge. Boxes B and C form the B/C motif, which appears to be exclusive to U3 snoRNAs, and boxes C' and D form the C'/D motif. The latter is functionally similar to the C/D motifs found in other snoRNAs. The 5' domain and the hinge region act as a pre-rRNA-binding domain. The 3' domain has conserved protein-binding sites. Both the box B/C and box C'/D motifs are sufficient for nuclear retention of U3 snoRNA. The box C'/D motif is also necessary for nucleolar localization, stability and hypermethylation of U3 snoRNA. Both box B/C and C'/D motifs are involved in specific protein interactions and are necessary for the rRNA processing functions of U3 snoRNA.

Additional gene information for GC06M042412 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC06M042412 Gene

Genomics for GC06M042412 Gene

GeneHancer (GH) Regulatory Elements for GC06M042412 Gene

Promoters and enhancers for GC06M042412 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I042411 Enhancer 0.4 Ensembl dbSUPER 550.8 +1.0 995 0.4 GC06M042412 TRERF1 LOC105375061
GH06I042448 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.3 -39.4 -39355 6.5 HDGF SIN3A FEZF1 ZNF2 ZNF213 KLF13 SP3 REST ZNF610 ZSCAN16 TRERF1 UBR2 ZNF318 BICRAL RRP36 ABCC10 TAF8 CUL7 GC06M042412
GH06I042401 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +7.4 7425 6.4 PKNOX1 ATF1 IRF4 TCF12 ZNF766 ATF7 FOS RUNX3 JUNB ATF4 TRERF1 GC06M042412 LOC105375061
GH06I042409 Enhancer 0.7 ENCODE dbSUPER 0.8 +2.6 2598 0.2 MEIS2 SOX6 IKZF1 TEAD4 GC06M042412 TRERF1 LOC105375061
GH06I042410 Enhancer 0.7 Ensembl dbSUPER 0.8 +3.1 3095 0.6 MEIS2 SOX6 ZNF512 TEAD4 DNPH1 GC06M042412 TRERF1 LOC105375061
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC06M042412 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC06M042412 Gene

Genomic Locations for GC06M042412 Gene
chr6:42,412,199-42,412,396
(GRCh38/hg38)
Size:
198 bases
Orientation:
Minus strand

Genomic View for GC06M042412 Gene

Genes around GC06M042412 on UCSC Golden Path with GeneCards custom track

GC06M042412 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC06M042412 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC06M042412 Gene

Proteins for GC06M042412 Gene

Post-translational modifications for GC06M042412 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC06M042412 Gene

Domains & Families for GC06M042412 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC06M042412 Gene

Function for GC06M042412 Gene

Phenotypes From GWAS Catalog for GC06M042412 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC06M042412 Gene

Localization for GC06M042412 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC06M042412 Gene

Pathways & Interactions for GC06M042412 Gene

SuperPathways for GC06M042412 Gene

No Data Available

Interacting Proteins for GC06M042412 Gene

Gene Ontology (GO) - Biological Process for GC06M042412 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC06M042412 Gene

Drugs & Compounds for GC06M042412 Gene

No Compound Related Data Available

Transcripts for GC06M042412 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC06M042412 Gene

No ASD Table

Relevant External Links for GC06M042412 Gene

GeneLoc Exon Structure for
GC06M042412

No data available for mRNA/cDNA for GC06M042412 Gene

Expression for GC06M042412 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC06M042412 Gene

Orthologs for GC06M042412 Gene

No data available for Orthologs and Evolution for GC06M042412 Gene

Paralogs for GC06M042412 Gene

No data available for Paralogs for GC06M042412 Gene

Variants for GC06M042412 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC06M042412 Gene

Disorders for GC06M042412 Gene

No disorders were found for GC06M042412 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC06M042412 Gene

Publications for GC06M042412 Gene

  1. Nuclear retention elements of U3 small nucleolar RNA. (PMID: 10567566) Speckmann W … Terns MP (Molecular and cellular biology 1999) 1
  2. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1

Products for GC06M042412 Gene

Sources for GC06M042412 Gene

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