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Aliases for GC06M038337 Gene

Subcategory (RNA class) for GC06M038337 Gene

snRNA

Quality Score for this RNA gene is

2

Aliases for GC06M038337 Gene

No Aliases found

ORGUL Members for GC06M038337 Gene

No data available for External Ids for GC06M038337 Gene

Summaries for GC06M038337 Gene

GeneCards Summary for GC06M038337 Gene

GC06M038337 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC06M038337 Gene

  • U1_snRNA: U1 is a small nuclear RNA (snRNA) component of the spliceosome (involved in pre-mRNA splicing). Its 5' end forms complementary base pairs with the 5' splice junction, thus defining the 5' donor site of an intron. There are significant differences in sequence and secondary structure between metazoan and yeast U1 snRNAs, the latter being much longer (568 nucleotides as compared to 164 nucleotides in human). Nevertheless, secondary structure predictions suggest that all U1 snRNAs share a 'common core' consisting of helices I, II, the proximal region of III, and IV.

Additional gene information for GC06M038337 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC06M038337 Gene

Genomics for GC06M038337 Gene

GeneHancer (GH) Regulatory Elements for GC06M038337 Gene

Promoters and enhancers for GC06M038337 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I036639 Enhancer 0.3 Ensembl 550.8 0.0 -28 0.2 POLR2A GC06M038337 LOC105375038 RNU1-88P ENSG00000251864
GH06I036641 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.8 -3.6 -3575 4.1 MLX ARID4B DMAP1 ZNF48 YY1 SLC30A9 ZNF121 ATF7 FOS RXRA CMTR1 BRPF3 RNF8 ETV7 KCTD20 SLC26A8 GC06M038337 LOC105375038 RNU1-88P ENSG00000251864
GH06I036649 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.4 -11.8 -11766 3.1 ATF1 SMAD1 IRF4 ZNF766 ATF7 RUNX3 REST PPARG NFIL3 ATF4 RAB44 LAP3P2 ENSG00000251864 CDKN1A FGD2 GC06M038337 RNU1-88P
GH06I036665 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -28.1 -28061 3.6 HDGF ZFP64 ARID4B FEZF1 DMAP1 ZNF2 IRF4 SLC30A9 ZNF213 ZNF207 CDKN1A MTCH1 ENSG00000251864 GC06M038337 RNU1-88P
GH06I036660 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -21.3 -21291 0.6 HDGF ATF1 ARNT YBX1 ATF7 MCM5 GMEB1 SMARCA4 ZNF184 NR2C1 CDKN1A FKBP5 RAB44 STK38 SRSF3 ETV7 PIM1 KCTD20 ENSG00000251864 RNU1-88P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC06M038337 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC06M038337 Gene

Genomic Locations for GC06M038337 Gene
chr6:36,639,512-36,639,672
(GRCh38/hg38)
Size:
161 bases
Orientation:
Minus strand

Genomic View for GC06M038337 Gene

Genes around GC06M038337 on UCSC Golden Path with GeneCards custom track

GC06M038337 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC06M038337 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC06M038337 Gene

Proteins for GC06M038337 Gene

Post-translational modifications for GC06M038337 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC06M038337 Gene

Domains & Families for GC06M038337 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC06M038337 Gene

Function for GC06M038337 Gene

Phenotypes From GWAS Catalog for GC06M038337 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC06M038337 Gene

Localization for GC06M038337 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC06M038337 Gene

Pathways & Interactions for GC06M038337 Gene

SuperPathways for GC06M038337 Gene

No Data Available

Interacting Proteins for GC06M038337 Gene

Gene Ontology (GO) - Biological Process for GC06M038337 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC06M038337 Gene

Drugs & Compounds for GC06M038337 Gene

No Compound Related Data Available

Transcripts for GC06M038337 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC06M038337 Gene

No ASD Table

Relevant External Links for GC06M038337 Gene

GeneLoc Exon Structure for
GC06M038337

No data available for mRNA/cDNA for GC06M038337 Gene

Expression for GC06M038337 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC06M038337 Gene

Orthologs for GC06M038337 Gene

No data available for Orthologs and Evolution for GC06M038337 Gene

Paralogs for GC06M038337 Gene

No data available for Paralogs for GC06M038337 Gene

Variants for GC06M038337 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC06M038337 Gene

Disorders for GC06M038337 Gene

No disorders were found for GC06M038337 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC06M038337 Gene

Publications for GC06M038337 Gene

  1. Two functionally distinct steps mediate high affinity binding of U1A protein to U1 hairpin II RNA. (PMID: 11297556) Katsamba PS … Laird-Offringa IA (The Journal of biological chemistry 2001) 1
  2. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  3. Crystal structure at 1.92 A resolution of the RNA-binding domain of the U1A spliceosomal protein complexed with an RNA hairpin. (PMID: 7984237) Oubridge C … Nagai K (Nature 1994) 1
  4. Saccharomyces cerevisiae U1 small nuclear RNA secondary structure contains both universal and yeast-specific domains. (PMID: 2405391) Kretzner L … Rosbash M (Proceedings of the National Academy of Sciences of the United States of America 1990) 1

Products for GC06M038337 Gene

Sources for GC06M038337 Gene

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