Free for academic non-profit institutions. Other users need a Commercial license

Aliases for GC05M149696 Gene

Subcategory (RNA class) for GC05M149696 Gene

snoRNA

Quality Score for this RNA gene is

15

Aliases for GC05M149696 Gene

No Aliases found

ORGUL Members for GC05M149696 Gene

No data available for External Ids for GC05M149696 Gene

Summaries for GC05M149696 Gene

GeneCards Summary for GC05M149696 Gene

GC05M149696 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC05M149696 Gene

  • U3_snoRNA: U3 snoRNA is a member of the box C/D class of small nucleolar RNAs. The U3 snoRNA secondary structure is characterised by a small 5' domain (with boxes A and A'), and a larger 3' domain (with boxes B, C, C', and D), the two domains being linked by a single-stranded hinge. Boxes B and C form the B/C motif, which appears to be exclusive to U3 snoRNAs, and boxes C' and D form the C'/D motif. The latter is functionally similar to the C/D motifs found in other snoRNAs. The 5' domain and the hinge region act as a pre-rRNA-binding domain. The 3' domain has conserved protein-binding sites. Both the box B/C and box C'/D motifs are sufficient for nuclear retention of U3 snoRNA. The box C'/D motif is also necessary for nucleolar localization, stability and hypermethylation of U3 snoRNA. Both box B/C and C'/D motifs are involved in specific protein interactions and are necessary for the rRNA processing functions of U3 snoRNA.

Additional gene information for GC05M149696 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC05M149696 Gene

Genomics for GC05M149696 Gene

GeneHancer (GH) Regulatory Elements for GC05M149696 Gene

Promoters and enhancers for GC05M149696 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J149679 Enhancer 1 Ensembl ENCODE 0.4 +15.0 14958 2.4 HDGF BMI1 IRF4 ZNF207 ZNF143 ATF7 BCLAF1 IKZF2 RUNX3 SP1 GC05M149696 ENSG00000221043 PIR47540
GH05J149665 Enhancer 1.2 FANTOM5 Ensembl ENCODE 0.3 +29.7 29729 0.9 HDGF HDAC1 PKNOX1 FOSL1 GATA3 ZNF316 BRD9 EGR1 FOSL2 NFE2 ENSG00000221043 CSNK1A1 SLC26A2 GC05M149696 PIR47540
GH05J149674 Enhancer 0.8 Ensembl ENCODE 0.3 +20.0 20043 2.9 ZMYM3 MITF ZSCAN21 ZFHX2 NFIC ZNF585B IKZF1 ADNP GLIS1 ZNF24 PPARGC1B ENSG00000221043 GC05M149696 PIR47540
GH05J149639 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.2 +55.1 55111 2.3 NFRKB RAD21 THRB YY1 ZNF766 EGR2 RXRA CAVIN1 CEBPB NFYC ENSG00000221043 RNU6-588P SLC26A2 ARHGEF37 PIR47540 GC05M149696
GH05J149667 Enhancer 0.7 Ensembl 0.3 +28.5 28458 0.2 HDGF HDAC1 CTCF PKNOX1 IRF2 ATF1 ARNT RAD21 CC2D1A BRD9 ENSG00000221043 GC05M149696 PIR47540
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC05M149696 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC05M149696 Gene

Genomic Locations for GC05M149696 Gene
chr5:149,695,748-149,695,959
(GRCh38/hg38)
Size:
212 bases
Orientation:
Minus strand

Genomic View for GC05M149696 Gene

Genes around GC05M149696 on UCSC Golden Path with GeneCards custom track

GC05M149696 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC05M149696 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC05M149696 Gene

Proteins for GC05M149696 Gene

Post-translational modifications for GC05M149696 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC05M149696 Gene

Domains & Families for GC05M149696 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC05M149696 Gene

Function for GC05M149696 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC05M149696 Gene

Localization for GC05M149696 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC05M149696 Gene

Pathways & Interactions for GC05M149696 Gene

SuperPathways for GC05M149696 Gene

No Data Available

Interacting Proteins for GC05M149696 Gene

Gene Ontology (GO) - Biological Process for GC05M149696 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC05M149696 Gene

Drugs & Compounds for GC05M149696 Gene

No Compound Related Data Available

Transcripts for GC05M149696 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for GC05M149696 Gene

No ASD Table

Relevant External Links for GC05M149696 Gene

GeneLoc Exon Structure for
GC05M149696

No data available for mRNA/cDNA for GC05M149696 Gene

Expression for GC05M149696 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC05M149696 Gene

Orthologs for GC05M149696 Gene

No data available for Orthologs and Evolution for GC05M149696 Gene

Paralogs for GC05M149696 Gene

No data available for Paralogs for GC05M149696 Gene

Variants for GC05M149696 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC05M149696 Gene

Disorders for GC05M149696 Gene

No disorders were found for GC05M149696 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC05M149696 Gene

Publications for GC05M149696 Gene

  1. Nuclear retention elements of U3 small nucleolar RNA. (PMID: 10567566) Speckmann W … Terns MP (Molecular and cellular biology 1999) 1
  2. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1

Products for GC05M149696 Gene

Sources for GC05M149696 Gene

Content
Loading form....