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Aliases for GC05M149117 Gene

Subcategory (RNA class) for GC05M149117 Gene

7SK RNA

Quality Score for this RNA gene is

2

Aliases for GC05M149117 Gene

No Aliases found

ORGUL Members for GC05M149117 Gene

No data available for External Ids for GC05M149117 Gene

Summaries for GC05M149117 Gene

GeneCards Summary for GC05M149117 Gene

GC05M149117 is an RNA Gene, and is affiliated with the 7SK RNA class.

fRNAdb sequence ontologies for GC05M149117 Gene

  • snRNA: A small nuclear RNA molecule involved in pre-mRNA splicing and processing.

Additional gene information for GC05M149117 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC05M149117 Gene

Genomics for GC05M149117 Gene

GeneHancer (GH) Regulatory Elements for GC05M149117 Gene

Promoters and enhancers for GC05M149117 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I149114 Enhancer 0.8 Ensembl ENCODE 550.8 +1.7 1721 1.4 CTCF ZNF654 RB1 CEBPB CEBPG REST RAD21 CC2D1A ZNF143 SMC3 GC05M149117 RN7SKP145 SH3TC2 MIR584 SH3TC2-DT RNU6-732P AFAP1L1 ENSG00000248647 ENSG00000253406 GC05P149108
GH05I149133 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -18.9 -18914 3.6 FOXA2 RAD21 ZBTB40 RFX5 YY1 EGR1 FOS EGR2 SMARCC1 RXRA SH3TC2 AFAP1L1 MIR584 SH3TC2-DT RNU6-732P ENSG00000248647 ENSG00000253406 ABLIM3 GC05M149047 GC05M149117
GH05I149124 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 -11.4 -11403 6.2 NFIB ZSCAN4 NEUROD1 ZNF2 RAD21 ZNF143 FOS RCOR1 SMARCA5 ZNF654 SH3TC2 SH3TC2-DT MIR584 RNU6-732P AFAP1L1 ENSG00000248647 ENSG00000253406 ABLIM3 GC05M149117 RN7SKP145
GH05I149113 Enhancer 0.5 ENCODE 0.8 +2.6 2617 0.2 JUND JUN CEBPB RCOR1 FOS EP300 TCF7L2 MIR584 SH3TC2 SH3TC2-DT RNU6-732P AFAP1L1 ENSG00000248647 ENSG00000253406 GC05M149117 RN7SKP145 GC05P149108
GH05I149130 Enhancer 0.9 ENCODE dbSUPER 0.4 -14.6 -14593 0.2 CTCF ESRRA NFIB CTBP1 ZNF316 GATA3 RCOR1 ZNF444 MAFK ZNF687 AFAP1L1 ENSG00000248647 ENSG00000253406 GC05M149117 ABLIM3 RN7SKP145 GC05M149047 GC05P149108
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC05M149117 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC05M149117 Gene

Genomic Locations for GC05M149117 Gene
chr5:149,116,167-149,116,480
(GRCh38/hg38)
Size:
314 bases
Orientation:
Minus strand

Genomic View for GC05M149117 Gene

Genes around GC05M149117 on UCSC Golden Path with GeneCards custom track

GC05M149117 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC05M149117 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC05M149117 Gene

Proteins for GC05M149117 Gene

Post-translational modifications for GC05M149117 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC05M149117 Gene

Domains & Families for GC05M149117 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC05M149117 Gene

Function for GC05M149117 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC05M149117 Gene

Localization for GC05M149117 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC05M149117 Gene

Pathways & Interactions for GC05M149117 Gene

SuperPathways for GC05M149117 Gene

No Data Available

Interacting Proteins for GC05M149117 Gene

Gene Ontology (GO) - Biological Process for GC05M149117 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC05M149117 Gene

Drugs & Compounds for GC05M149117 Gene

No Compound Related Data Available

Transcripts for GC05M149117 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC05M149117 Gene

No ASD Table

Relevant External Links for GC05M149117 Gene

GeneLoc Exon Structure for
GC05M149117

No data available for mRNA/cDNA for GC05M149117 Gene

Expression for GC05M149117 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC05M149117 Gene

Orthologs for GC05M149117 Gene

No data available for Orthologs and Evolution for GC05M149117 Gene

Paralogs for GC05M149117 Gene

No data available for Paralogs for GC05M149117 Gene

Variants for GC05M149117 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC05M149117 Gene

Disorders for GC05M149117 Gene

No disorders were found for GC05M149117 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC05M149117 Gene

Publications for GC05M149117 Gene

  1. Transcription: surprising role for an elusive small nuclear RNA. (PMID: 11864590) Blencowe BJ (Current biology : CB 2002) 1
  2. Structural analyses of the 7SK ribonucleoprotein (RNP), the most abundant human small RNP of unknown function. (PMID: 1646389) Wassarman DA … Steitz JA (Molecular and cellular biology 1991) 1

Products for GC05M149117 Gene

Sources for GC05M149117 Gene

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