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Aliases for GC05M139718 Gene

Subcategory (RNA class) for GC05M139718 Gene

snRNA

Quality Score for this RNA gene is

15

Aliases for GC05M139718 Gene

No Aliases found

ORGUL Members for GC05M139718 Gene

No data available for External Ids for GC05M139718 Gene

Summaries for GC05M139718 Gene

GeneCards Summary for GC05M139718 Gene

GC05M139718 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC05M139718 Gene

  • U6_snRNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA.

Additional gene information for GC05M139718 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC05M139718 Gene

Genomics for GC05M139718 Gene

GeneHancer (GH) Regulatory Elements for GC05M139718 Gene

Promoters and enhancers for GC05M139718 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J139705 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.4 +9.0 9030 6.7 HDGF CLOCK SMAD1 FOXA2 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 PSD2 HARS2 ANKHD1 APBB3 TMCO6 WDR55 CXXC5 TMEM173 DNAJC18 MATR3
GH05J139683 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +25.2 25230 18.9 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B ANKHD1 HARS2 WDR55 CXXC5 TMCO6 IK PURA LOC101929719 MATR3 APBB3
GH05J139713 Enhancer 0.4 dbSUPER 0.7 +3.6 3629 1.1 ZNF664 KDM1A MNT GC05M139718 RNU6-236P ENSG00000249526
GH05J139712 Enhancer 0.4 dbSUPER 0.4 +5.0 5033 1.1 ZNF189 ZNF600 CXXC5 GC05M139718 RNU6-236P ENSG00000249526
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC05M139718 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC05M139718 Gene

Genomic Locations for GC05M139718 Gene
chr5:139,717,984-139,718,090
(GRCh38/hg38)
Size:
107 bases
Orientation:
Minus strand

Genomic View for GC05M139718 Gene

Genes around GC05M139718 on UCSC Golden Path with GeneCards custom track

GC05M139718 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC05M139718 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC05M139718 Gene

Proteins for GC05M139718 Gene

Post-translational modifications for GC05M139718 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC05M139718 Gene

Domains & Families for GC05M139718 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC05M139718 Gene

Function for GC05M139718 Gene

Phenotypes From GWAS Catalog for GC05M139718 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC05M139718 Gene

Localization for GC05M139718 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC05M139718 Gene

Pathways & Interactions for GC05M139718 Gene

SuperPathways for GC05M139718 Gene

No Data Available

Interacting Proteins for GC05M139718 Gene

Gene Ontology (GO) - Biological Process for GC05M139718 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC05M139718 Gene

Drugs & Compounds for GC05M139718 Gene

No Compound Related Data Available

Transcripts for GC05M139718 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for GC05M139718 Gene

No ASD Table

Relevant External Links for GC05M139718 Gene

GeneLoc Exon Structure for
GC05M139718

No data available for mRNA/cDNA for GC05M139718 Gene

Expression for GC05M139718 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC05M139718 Gene

Orthologs for GC05M139718 Gene

No data available for Orthologs and Evolution for GC05M139718 Gene

Paralogs for GC05M139718 Gene

No data available for Paralogs for GC05M139718 Gene

Variants for GC05M139718 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC05M139718 Gene

Disorders for GC05M139718 Gene

No disorders were found for GC05M139718 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC05M139718 Gene

Publications for GC05M139718 Gene

  1. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  2. Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions. (PMID: 1960724) Orum H … Engberg J (Journal of molecular biology 1991) 1
  3. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

Products for GC05M139718 Gene

Sources for GC05M139718 Gene

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