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Aliases for GC05M138563 Gene

Subcategory (RNA class) for GC05M138563 Gene

snoRNA

Quality Score for this RNA gene is

9

Aliases for GC05M138563 Gene

No Aliases found

No data available for External Ids for GC05M138563 Gene

Summaries for GC05M138563 Gene

GeneCards Summary for GC05M138563 Gene

GC05M138563 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC05M138563 Gene

  • C_D_box_snoRNA: Most box C/D snoRNAs also contain long (>10 nt) sequences complementary to rRNA. Boxes C and D, as well as boxes C' and D', are usually located in close proximity, and form a structure known as the box C/D motif. This motif is important for snoRNA stability, processing, nucleolar targeting and function. A small number of box C/D snoRNAs are involved in rRNA processing; most, however, are known or predicted to serve as guide RNAs in ribose methylation of rRNA. Targeting involves direct base pairing of the snoRNA at the rRNA site to be modified and selection of a rRNA nucleotide a fixed distance from box D or D'.

View fRNAdb secondary structures for GC05M138563

Additional gene information for GC05M138563 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC05M138563 Gene

Genomics for GC05M138563 Gene

GeneHancer (GH) Regulatory Elements for GC05M138563 Gene

Promoters and enhancers for GC05M138563 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I138573 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 0.4 -13.9 -13892 3.6 CLOCK MLX FEZF1 DMAP1 YY1 ZNF213 E2F8 ZNF143 SP3 MEF2D HSPA9 HNRNPA0 KDM3B DNAJC18 MATR3 CTNNA1 GC05M138563 GC05M138564 SNORD63 PIR31839
GH05I138564 Enhancer 0.8 ENCODE dbSUPER 0.4 -5.2 -5187 3.2 PAF1 ZNF362 FOXA2 RFX1 CEBPG FOXA1 CTBP1 POLR2B POLR2A CEBPA PROB1 GC05M138563 GC05M138564 HSPA9 PIR31839 SNORD63 LOC105379193
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC05M138563 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC05M138563 Gene

Genomic Locations for GC05M138563 Gene
chr5:138,561,042-138,561,110
(GRCh38/hg38)
Size:
69 bases
Orientation:
Minus strand

Genomic View for GC05M138563 Gene

Genes around GC05M138563 on UCSC Golden Path with GeneCards custom track

GC05M138563 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC05M138563 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC05M138563 Gene

ORGUL Member Location for GC05M138563 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC05M138563 Gene

Proteins for GC05M138563 Gene

Post-translational modifications for GC05M138563 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC05M138563 Gene

Domains & Families for GC05M138563 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC05M138563 Gene

Function for GC05M138563 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC05M138563 Gene

Localization for GC05M138563 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC05M138563 Gene

Pathways & Interactions for GC05M138563 Gene

SuperPathways for GC05M138563 Gene

No Data Available

Interacting Proteins for GC05M138563 Gene

Gene Ontology (GO) - Biological Process for GC05M138563 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC05M138563 Gene

Drugs & Compounds for GC05M138563 Gene

No Compound Related Data Available

Transcripts for GC05M138563 Gene

fRNAdb Secondary structures for GC05M138563 Gene

  • FR070391

Alternative Splicing Database (ASD) splice patterns (SP) for GC05M138563 Gene

No ASD Table

Relevant External Links for GC05M138563 Gene

GeneLoc Exon Structure for
GC05M138563

No data available for mRNA/cDNA for GC05M138563 Gene

Expression for GC05M138563 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC05M138563 Gene

Orthologs for GC05M138563 Gene

No data available for Orthologs and Evolution for GC05M138563 Gene

Paralogs for GC05M138563 Gene

No data available for Paralogs for GC05M138563 Gene

Variants for GC05M138563 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC05M138563 Gene

Disorders for GC05M138563 Gene

No disorders were found for GC05M138563 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC05M138563 Gene

Publications for GC05M138563 Gene

  1. The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts. (PMID: 18089548) Genome Information Integration Project And H-Invitational 2 … Gojobori T (Nucleic acids research 2008) 1
  2. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 1
  3. NONCODE: an integrated knowledge database of non-coding RNAs. (PMID: 15608158) Liu C … Chen R (Nucleic acids research 2005) 1
  4. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  5. Integrative annotation of 21,037 human genes validated by full-length cDNA clones. (PMID: 15103394) Imanishi T … Sugano S (PLoS biology 2004) 1

Products for GC05M138563 Gene

Sources for GC05M138563 Gene

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