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Aliases for GC05M126556 Gene

Subcategory (RNA class) for GC05M126556 Gene

snRNA

Quality Score for this RNA gene is

15

Aliases for GC05M126556 Gene

No Aliases found

ORGUL Members for GC05M126556 Gene

No data available for External Ids for GC05M126556 Gene

Summaries for GC05M126556 Gene

GeneCards Summary for GC05M126556 Gene

GC05M126556 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC05M126556 Gene - the ORGUL cluster for this gene includes several descriptions:

  • U6_snRNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA.

  • U6 spliceosomal RNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA [2]. This model hits a large number of sequences in vertebrate genomes, which appear to be U6 derived pseudogenes or repeats. This family has a high significance threshold to minimise this problem, but many annotated pseudogenes remain.

View fRNAdb secondary structures for GC05M126556

Additional gene information for GC05M126556 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC05M126556 Gene

Genomics for GC05M126556 Gene

GeneHancer (GH) Regulatory Elements for GC05M126556 Gene

Promoters and enhancers for GC05M126556 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J126551 Enhancer 0.2 dbSUPER 650.7 +1.6 1618 0.2 GC05M126556 RNU6-290P ALDH7A1 ENSG00000279118
GH05J126538 Enhancer 1.1 Ensembl ENCODE 0.4 +14.1 14125 1.3 FOXA2 ARID4B ZNF2 ARID2 ZNF143 RXRA NCOA1 REST PPARG MIER3 ENSG00000250602 GRAMD2B ALDH7A1 GC05M126556 ENSG00000279118
GH05J126512 Enhancer 1.4 Ensembl ENCODE dbSUPER 0.3 +38.3 38329 5.1 PKNOX1 SMAD1 ARNT NEUROD1 FEZF1 ZNF766 FOS REST ZNF592 MEF2D ENSG00000250602 GRAMD2B ALDH7A1 ENSG00000279118 GC05M126556
GH05J126543 Enhancer 0.9 ENCODE dbSUPER 0.4 +9.5 9500 0.9 CTCF MXI1 FOXA2 SAP130 MLX MAX RAD21 ARID2 HNF4G ZNF143 ALDH7A1 PHAX RPLP1P7 TEX43 ENSG00000250602 GRAMD2B GC05M126556 ENSG00000279118
GH05J126518 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.3 +33.9 33874 2.9 HDAC1 PKNOX1 TAF9B NFIB CHAMP1 TCF12 ZNF766 CEBPB NCOA1 GATAD2B GRAMD2B ENSG00000250602 ENSG00000279118 GC05M126556
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC05M126556 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC05M126556 Gene

Genomic Locations for GC05M126556 Gene
chr5:126,553,301-126,553,398
(GRCh38/hg38)
Size:
98 bases
Orientation:
Minus strand

Genomic View for GC05M126556 Gene

Genes around GC05M126556 on UCSC Golden Path with GeneCards custom track

GC05M126556 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC05M126556 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC05M126556 Gene

ORGUL Member Location for GC05M126556 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC05M126556 Gene

Proteins for GC05M126556 Gene

Post-translational modifications for GC05M126556 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC05M126556 Gene

Domains & Families for GC05M126556 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC05M126556 Gene

Function for GC05M126556 Gene

Phenotypes From GWAS Catalog for GC05M126556 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC05M126556 Gene

Localization for GC05M126556 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC05M126556 Gene

Pathways & Interactions for GC05M126556 Gene

SuperPathways for GC05M126556 Gene

No Data Available

Interacting Proteins for GC05M126556 Gene

Gene Ontology (GO) - Biological Process for GC05M126556 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC05M126556 Gene

Drugs & Compounds for GC05M126556 Gene

No Compound Related Data Available

Transcripts for GC05M126556 Gene

fRNAdb Secondary structures for GC05M126556 Gene

  • FR123828

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for GC05M126556 Gene

No ASD Table

Relevant External Links for GC05M126556 Gene

GeneLoc Exon Structure for
GC05M126556

No data available for mRNA/cDNA for GC05M126556 Gene

Expression for GC05M126556 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC05M126556 Gene

Orthologs for GC05M126556 Gene

No data available for Orthologs and Evolution for GC05M126556 Gene

Paralogs for GC05M126556 Gene

No data available for Paralogs for GC05M126556 Gene

Variants for GC05M126556 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC05M126556 Gene

Disorders for GC05M126556 Gene

No disorders were found for GC05M126556 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC05M126556 Gene

Publications for GC05M126556 Gene

  1. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  2. Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions. (PMID: 1960724) Orum H … Engberg J (Journal of molecular biology 1991) 1
  3. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

Products for GC05M126556 Gene

Sources for GC05M126556 Gene

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