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Aliases for GC05M115775 Gene

Subcategory (RNA class) for GC05M115775 Gene

snRNA

Quality Score for this RNA gene is

15

Aliases for GC05M115775 Gene

No Aliases found

ORGUL Members for GC05M115775 Gene

No data available for External Ids for GC05M115775 Gene

Summaries for GC05M115775 Gene

GeneCards Summary for GC05M115775 Gene

GC05M115775 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC05M115775 Gene

  • U2_snRNA: U2 is a small nuclear RNA (snRNA) component of the spliceosome (involved in pre-mRNA splicing). Complementary binding between U2 snRNA (in an area lying towards the 5' end but 3' to hairpin I) and the branchpoint sequence (BPS) of the intron results in the bulging out of an unpaired adenine, on the BPS, which initiates a nucleophilic attack at the intronic 5' splice site, thus starting the first of two transesterification reactions that mediate splicing.

Additional gene information for GC05M115775 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC05M115775 Gene

Genomics for GC05M115775 Gene

GeneHancer (GH) Regulatory Elements for GC05M115775 Gene

Promoters and enhancers for GC05M115775 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J115774 Enhancer 0.3 ENCODE 650.7 -0.3 -274 1.2 POLR2A GC05M115775 RNU2-49P AP3S1 ATG12 CDO1
GH05J115772 Enhancer 0.2 ENCODE 650.7 +1.1 1131 1.2 GC05M115775 RNU2-49P ENSG00000251118
GH05J115815 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 0.3 -42.0 -42022 1.7 ZNF2 YY1 GLIS2 ZNF213 ZNF263 SP3 RXRA MXD4 REST ZNF518A CDO1 ATG12 PGGT1B GC05M115775 RNU2-49P
GH05J115785 Enhancer 0.4 ENCODE 0.4 -11.3 -11277 0.2 SP1 TRIM28 GC05M115775 RNU2-49P CDO1
GH05J115806 Enhancer 0.5 ENCODE 0.3 -32.5 -32492 1.2 SP1 GATA3 DPF2 BCL6 PRDM1 CDO1 RNU2-49P ENSG00000251118 ATG12 AP3S1 TMED7 TMED7-TICAM2 GC05M115775
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC05M115775 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC05M115775 Gene

Genomic Locations for GC05M115775 Gene
chr5:115,774,318-115,774,502
(GRCh38/hg38)
Size:
185 bases
Orientation:
Minus strand

Genomic View for GC05M115775 Gene

Genes around GC05M115775 on UCSC Golden Path with GeneCards custom track

GC05M115775 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC05M115775 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC05M115775 Gene

Proteins for GC05M115775 Gene

Post-translational modifications for GC05M115775 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC05M115775 Gene

Domains & Families for GC05M115775 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC05M115775 Gene

Function for GC05M115775 Gene

Phenotypes From GWAS Catalog for GC05M115775 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC05M115775 Gene

Localization for GC05M115775 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC05M115775 Gene

Pathways & Interactions for GC05M115775 Gene

SuperPathways for GC05M115775 Gene

No Data Available

Interacting Proteins for GC05M115775 Gene

Gene Ontology (GO) - Biological Process for GC05M115775 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC05M115775 Gene

Drugs & Compounds for GC05M115775 Gene

No Compound Related Data Available

Transcripts for GC05M115775 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for GC05M115775 Gene

No ASD Table

Relevant External Links for GC05M115775 Gene

GeneLoc Exon Structure for
GC05M115775

No data available for mRNA/cDNA for GC05M115775 Gene

Expression for GC05M115775 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC05M115775 Gene

Orthologs for GC05M115775 Gene

No data available for Orthologs and Evolution for GC05M115775 Gene

Paralogs for GC05M115775 Gene

No data available for Paralogs for GC05M115775 Gene

Variants for GC05M115775 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC05M115775 Gene

Disorders for GC05M115775 Gene

No disorders were found for GC05M115775 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC05M115775 Gene

Publications for GC05M115775 Gene

  1. Crystal structure of a model branchpoint-U2 snRNA duplex containing bulged adenosines. (PMID: 11350032) Berglund JA … Schultz SC (RNA (New York, N.Y.) 2001) 1
  2. A conserved pseudouridine modification in eukaryotic U2 snRNA induces a change in branch-site architecture. (PMID: 11424937) Newby MI … Greenbaum NL (RNA (New York, N.Y.) 2001) 1
  3. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  4. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

Products for GC05M115775 Gene

Sources for GC05M115775 Gene

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