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Aliases for GC05M087300 Gene

Subcategory (RNA class) for GC05M087300 Gene

snRNA

Quality Score for this RNA gene is

2

Aliases for GC05M087300 Gene

No Aliases found

ORGUL Members for GC05M087300 Gene

No data available for External Ids for GC05M087300 Gene

Summaries for GC05M087300 Gene

GeneCards Summary for GC05M087300 Gene

GC05M087300 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC05M087300 Gene

  • U6_snRNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA.

Additional gene information for GC05M087300 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC05M087300 Gene

Genomics for GC05M087300 Gene

GeneHancer (GH) Regulatory Elements for GC05M087300 Gene

Promoters and enhancers for GC05M087300 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I087299 Enhancer 0.8 Ensembl ENCODE 550.8 -1.5 -1537 3 JUN SIN3A SP1 FOSL1 JUND POLR2A CREB1 HMBOX1 FOS FOSL2 GC05M087300 RNU6-606P LOC644285 RASA1
GH05I087297 Enhancer 0.4 Ensembl 550.8 +1.5 1496 1.8 JUND FOS GC05M087300 RNU6-606P RN7SL629P RASA1
GH05I087308 Enhancer 0.7 FANTOM5 Ensembl 0.4 -8.4 -8399 0.4 CBFA2T3 EBF1 RUNX3 RASA1 GC05M087300 RNU6-606P LOC644285
GH05I087321 Enhancer 0.3 FANTOM5 0.3 -22.1 -22122 0 MAFK LOC644285 RNU6-606P GC05M087300 RASA1
GH05I087323 Enhancer 0.3 FANTOM5 0.3 -23.7 -23709 0.4 SPI1 LOC644285 LINC01949 CCNH GC05M087300 RNU6-606P RASA1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC05M087300 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC05M087300 Gene

Genomic Locations for GC05M087300 Gene
chr5:87,299,686-87,299,797
(GRCh38/hg38)
Size:
112 bases
Orientation:
Minus strand

Genomic View for GC05M087300 Gene

Genes around GC05M087300 on UCSC Golden Path with GeneCards custom track

GC05M087300 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC05M087300 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC05M087300 Gene

Proteins for GC05M087300 Gene

Post-translational modifications for GC05M087300 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC05M087300 Gene

Domains & Families for GC05M087300 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC05M087300 Gene

Function for GC05M087300 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC05M087300 Gene

Localization for GC05M087300 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC05M087300 Gene

Pathways & Interactions for GC05M087300 Gene

SuperPathways for GC05M087300 Gene

No Data Available

Interacting Proteins for GC05M087300 Gene

Gene Ontology (GO) - Biological Process for GC05M087300 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC05M087300 Gene

Drugs & Compounds for GC05M087300 Gene

No Compound Related Data Available

Transcripts for GC05M087300 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC05M087300 Gene

No ASD Table

Relevant External Links for GC05M087300 Gene

GeneLoc Exon Structure for
GC05M087300

No data available for mRNA/cDNA for GC05M087300 Gene

Expression for GC05M087300 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC05M087300 Gene

Orthologs for GC05M087300 Gene

No data available for Orthologs and Evolution for GC05M087300 Gene

Paralogs for GC05M087300 Gene

No data available for Paralogs for GC05M087300 Gene

Variants for GC05M087300 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC05M087300 Gene

Disorders for GC05M087300 Gene

No disorders were found for GC05M087300 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC05M087300 Gene

Publications for GC05M087300 Gene

  1. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  2. Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions. (PMID: 1960724) Orum H … Engberg J (Journal of molecular biology 1991) 1
  3. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

Products for GC05M087300 Gene

Sources for GC05M087300 Gene

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