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Aliases for GC05M037700 Gene

Subcategory (RNA class) for GC05M037700 Gene

snRNA

Quality Score for this RNA gene is

2

Aliases for GC05M037700 Gene

No Aliases found

ORGUL Members for GC05M037700 Gene

No data available for External Ids for GC05M037700 Gene

Summaries for GC05M037700 Gene

GeneCards Summary for GC05M037700 Gene

GC05M037700 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC05M037700 Gene

  • U6_snRNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA.

Additional gene information for GC05M037700 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC05M037700 Gene

Genomics for GC05M037700 Gene

GeneHancer (GH) Regulatory Elements for GC05M037700 Gene

Promoters and enhancers for GC05M037700 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I037695 Enhancer 1 Ensembl ENCODE 0.8 +3.9 3864 1.4 USF1 INSM2 FEZF1 HIC1 GATA3 ELK1 ZNF366 SCRT2 PRDM10 ZNF600 ENSG00000250155 GC05M037700 RNU6-484P GC05P037665 WDR70
GH05I037717 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -17.7 -17696 1.9 PKNOX1 FOXA2 MLX ARID4B SIN3A FEZF1 ZNF213 FOS DEK SP5 C5orf42 LIFR-AS1 ENSG00000270558 LIFR ENSG00000272103 GC05M037700 RNU6-484P GDNF-AS1 WDR70
GH05I037721 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.3 -22.9 -22908 4.3 ATF1 PKNOX1 ZNF143 ATF7 FOS RUNX3 JUNB REST TSHZ1 ATF4 ENSG00000250155 GC05M037700 RNU6-484P GDNF-AS1 WDR70
GH05I037737 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.3 -39.2 -39227 4.6 PKNOX1 SMAD1 FEZF1 IRF4 ZNF213 ATF7 FOS RUNX3 JUNB TSHZ1 C5orf42 GDNF-AS1 GDNF WDR70 GC05M037700 RNU6-484P
GH05I037667 Enhancer 1.2 Ensembl ENCODE 0.3 +31.7 31721 2.3 ATF1 FOXA2 SIN3A BRCA1 ETS1 TCF12 ATF7 FOS SP3 NCOA1 ENSG00000250155 GC05P037665 GC05M037700 RNU6-484P WDR70
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC05M037700 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC05M037700 Gene

Genomic Locations for GC05M037700 Gene
chr5:37,700,330-37,700,437
(GRCh38/hg38)
Size:
108 bases
Orientation:
Minus strand

Genomic View for GC05M037700 Gene

Genes around GC05M037700 on UCSC Golden Path with GeneCards custom track

GC05M037700 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC05M037700 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC05M037700 Gene

Proteins for GC05M037700 Gene

Post-translational modifications for GC05M037700 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC05M037700 Gene

Domains & Families for GC05M037700 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC05M037700 Gene

Function for GC05M037700 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC05M037700 Gene

Localization for GC05M037700 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC05M037700 Gene

Pathways & Interactions for GC05M037700 Gene

SuperPathways for GC05M037700 Gene

No Data Available

Interacting Proteins for GC05M037700 Gene

Gene Ontology (GO) - Biological Process for GC05M037700 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC05M037700 Gene

Drugs & Compounds for GC05M037700 Gene

No Compound Related Data Available

Transcripts for GC05M037700 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC05M037700 Gene

No ASD Table

Relevant External Links for GC05M037700 Gene

GeneLoc Exon Structure for
GC05M037700

No data available for mRNA/cDNA for GC05M037700 Gene

Expression for GC05M037700 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC05M037700 Gene

Orthologs for GC05M037700 Gene

No data available for Orthologs and Evolution for GC05M037700 Gene

Paralogs for GC05M037700 Gene

No data available for Paralogs for GC05M037700 Gene

Variants for GC05M037700 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC05M037700 Gene

Disorders for GC05M037700 Gene

No disorders were found for GC05M037700 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC05M037700 Gene

Publications for GC05M037700 Gene

  1. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  2. Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions. (PMID: 1960724) Orum H … Engberg J (Journal of molecular biology 1991) 1
  3. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

Products for GC05M037700 Gene

Sources for GC05M037700 Gene

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