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Aliases for GC04P079267 Gene

Subcategory (RNA class) for GC04P079267 Gene

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Quality Score for this RNA gene is

13.4

Aliases for GC04P079267 Gene

No Aliases found

ORGUL Members for GC04P079267 Gene

No data available for External Ids for GC04P079267 Gene

Summaries for GC04P079267 Gene

GeneCards Summary for GC04P079267 Gene

GC04P079267 is an RNA Gene, and is affiliated with the undefined RNA class.

fRNAdb sequence ontologies for GC04P079267 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for GC04P079267

Additional gene information for GC04P079267 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC04P079267 Gene

Genomics for GC04P079267 Gene

GeneHancer (GH) Regulatory Elements for GC04P079267 Gene

Promoters and enhancers for GC04P079267 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J079266 Enhancer 0.2 Ensembl 600.7 -1.0 -1040 0.2 GC04P079267 PCAT4 NAA11 GC04M079034 LINC01088
GH04J079209 Enhancer 1.4 FANTOM5 ENCODE dbSUPER 0.2 -56.6 -56611 4.2 CC2D1A ZFX ZKSCAN8 CBFA2T2 ZNF148 MLLT1 CEBPG GTF2F1 CSDE1 TFE3 NAA11 GC04P079267 GC04M079034 LINC01088
GH04J079273 Enhancer 0.7 UCNEbase 0.4 +6.4 6358 0.3 CBFA2T2 TRIM24 POLR2A RCOR1 TCF12 DACH1 CBFA2T3 GC04P079267 NAA11 LINC01088
GH04J079324 Promoter/Enhancer 1.2 EPDnew ENCODE 0.2 +57.9 57907 1.8 ZFX GMEB1 ATF1 NR2C1 NRF1 POLR2A NR2C2 NFIC CREM FOXK2 NAA11 GC04P079267
GH04J079199 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.2 -68.7 -68740 1.6 CBFA2T2 TRIM24 SMARCA4 DPF2 HDAC1 EP300 SOX6 TCF12 HDAC2 FOXK2 GC04P079267 GC04M079034 LINC01088
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC04P079267 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC04P079267 Gene

Genomic Locations for GC04P079267 Gene
chr4:79,267,741-79,267,977
(GRCh38/hg38)
Size:
237 bases
Orientation:
Plus strand

Genomic View for GC04P079267 Gene

Genes around GC04P079267 on UCSC Golden Path with GeneCards custom track

GC04P079267 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC04P079267 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC04P079267 Gene

ORGUL Member Location for GC04P079267 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC04P079267 Gene

Proteins for GC04P079267 Gene

Post-translational modifications for GC04P079267 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC04P079267 Gene

Domains & Families for GC04P079267 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC04P079267 Gene

Function for GC04P079267 Gene

Phenotypes From GWAS Catalog for GC04P079267 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC04P079267 Gene

Localization for GC04P079267 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC04P079267 Gene

Pathways & Interactions for GC04P079267 Gene

PathCards logo

SuperPathways for GC04P079267 Gene

No Data Available

Interacting Proteins for GC04P079267 Gene

Gene Ontology (GO) - Biological Process for GC04P079267 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC04P079267 Gene

Drugs & Compounds for GC04P079267 Gene

No Compound Related Data Available

Transcripts for GC04P079267 Gene

fRNAdb Secondary structures for GC04P079267 Gene

  • FR181347
  • FR308474

Alternative Splicing Database (ASD) splice patterns (SP) for GC04P079267 Gene

No ASD Table

Relevant External Links for GC04P079267 Gene

GeneLoc Exon Structure for
GC04P079267

No data available for mRNA/cDNA for GC04P079267 Gene

Expression for GC04P079267 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC04P079267 Gene

Orthologs for GC04P079267 Gene

No data available for Orthologs and Evolution for GC04P079267 Gene

Paralogs for GC04P079267 Gene

No data available for Paralogs for GC04P079267 Gene

Variants for GC04P079267 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC04P079267 Gene

Disorders for GC04P079267 Gene

No disorders were found for GC04P079267 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC04P079267 Gene

Publications for GC04P079267 Gene

  1. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen JS … Haussler D (PLoS computational biology 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  3. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S … Stadler PF (Nature biotechnology 2005) 1

No data available for External Links for GC04P079267 Gene

Products for GC04P079267 Gene

Sources for GC04P079267 Gene

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