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Aliases for GC04P001974 Gene

Subcategory (RNA class) for GC04P001974 Gene

scaRNA

Quality Score for this RNA gene is

9

Aliases for GC04P001974 Gene

No Aliases found

No data available for External Ids for GC04P001974 Gene

Summaries for GC04P001974 Gene

GeneCards Summary for GC04P001974 Gene

GC04P001974 is an RNA Gene, and is affiliated with the scaRNA class.

fRNAdb sequence ontologies for GC04P001974 Gene

  • H_ACA_box_snoRNA: Members of the box H/ACA family contain an ACA triplet, exactly 3 nt upstream from the 3' end and an H-box in a hinge region that links two structurally similar functional domains of the molecule. Both boxes are important for snoRNA biosynthesis and function. A few box H/ACA snoRNAs are involved in rRNA processing; most others are known or predicted to participate in selection of uridine nucleosides in rRNA to be converted to pseudouridines. Site selection is mediated by direct base pairing of the snoRNA with rRNA through one or both targeting domains.

View fRNAdb secondary structures for GC04P001974

Additional gene information for GC04P001974 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC04P001974 Gene

Genomics for GC04P001974 Gene

GeneHancer (GH) Regulatory Elements for GC04P001974 Gene

Promoters and enhancers for GC04P001974 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04I001970 Enhancer 0.2 FANTOM5 0.8 -3.5 -3504 0.4 FGFR3 NSD2 GC04M001967 GC04P001974 GC04P001975
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC04P001974 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC04P001974 Gene

Genomic Locations for GC04P001974 Gene
chr4:1,974,635-1,974,760
(GRCh38/hg38)
Size:
126 bases
Orientation:
Plus strand

Genomic View for GC04P001974 Gene

Genes around GC04P001974 on UCSC Golden Path with GeneCards custom track

GC04P001974 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC04P001974 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC04P001974 Gene

ORGUL Member Location for GC04P001974 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC04P001974 Gene

Proteins for GC04P001974 Gene

Post-translational modifications for GC04P001974 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC04P001974 Gene

Domains & Families for GC04P001974 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC04P001974 Gene

Function for GC04P001974 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC04P001974 Gene

Localization for GC04P001974 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC04P001974 Gene

Pathways & Interactions for GC04P001974 Gene

SuperPathways for GC04P001974 Gene

No Data Available

Interacting Proteins for GC04P001974 Gene

Gene Ontology (GO) - Biological Process for GC04P001974 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC04P001974 Gene

Drugs & Compounds for GC04P001974 Gene

No Compound Related Data Available

Transcripts for GC04P001974 Gene

fRNAdb Secondary structures for GC04P001974 Gene

  • FR267020

Alternative Splicing Database (ASD) splice patterns (SP) for GC04P001974 Gene

No ASD Table

Relevant External Links for GC04P001974 Gene

GeneLoc Exon Structure for
GC04P001974

No data available for mRNA/cDNA for GC04P001974 Gene

Expression for GC04P001974 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC04P001974 Gene

Orthologs for GC04P001974 Gene

No data available for Orthologs and Evolution for GC04P001974 Gene

Paralogs for GC04P001974 Gene

No data available for Paralogs for GC04P001974 Gene

Variants for GC04P001974 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC04P001974 Gene

Disorders for GC04P001974 Gene

No disorders were found for GC04P001974 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC04P001974 Gene

Publications for GC04P001974 Gene

  1. The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts. (PMID: 18089548) Genome Information Integration Project And H-Invitational 2 … Gojobori T (Nucleic acids research 2008) 1
  2. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 1
  3. NONCODE: an integrated knowledge database of non-coding RNAs. (PMID: 15608158) Liu C … Chen R (Nucleic acids research 2005) 1
  4. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  5. Integrative annotation of 21,037 human genes validated by full-length cDNA clones. (PMID: 15103394) Imanishi T … Sugano S (PLoS biology 2004) 1

Products for GC04P001974 Gene

Sources for GC04P001974 Gene

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