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Aliases for GC03P113719 Gene

Subcategory (RNA class) for GC03P113719 Gene

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Quality Score for this RNA gene is

0.4

Aliases for GC03P113719 Gene

No Aliases found

ORGUL Members for GC03P113719 Gene

No data available for External Ids for GC03P113719 Gene

Summaries for GC03P113719 Gene

GeneCards Summary for GC03P113719 Gene

GC03P113719 is an RNA Gene, and is affiliated with the undefined RNA class.

fRNAdb sequence ontologies for GC03P113719 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for GC03P113719

Additional gene information for GC03P113719 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC03P113719 Gene

Genomics for GC03P113719 Gene

GeneHancer (GH) Regulatory Elements for GC03P113719 Gene

Promoters and enhancers for GC03P113719 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I113694 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE 0.3 -21.9 -21930 4.8 HDGF PKNOX1 ARID4B NEUROD1 SIN3A DMAP1 YBX1 ZBTB7B YY1 E2F8 USF3 NAA50 GTPBP8 NEPRO QTRT2 SIDT1 ATP6V1A GC03P113719
GH03I113736 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 +18.1 18114 2.3 CTCF ZNF384 KMT2B RAD21 ZNF143 SMC3 BCLAF1 RUNX3 SMARCA5 ZNF654 USF3 QTRT2 CCDC191 ATP6V1A ENSG00000239280 NAA50 GC03P113719
GH03I113721 Enhancer 0.3 dbSUPER 0.8 +2.6 2647 1.1 NFE2 NAA50 ENSG00000242659 ATP6V1A USF3 GC03P113719 ENSG00000239280
GH03I113730 Enhancer 0.2 dbSUPER 0.4 +11.7 11749 1 USF3 GRAMD1C ATP6V1A GC03P113719 ENSG00000239280 NAA50
GH03I113738 Enhancer 0.2 dbSUPER 0.4 +19.7 19721 0.6 ATP6V1A ENSG00000239280 NAA50 GC03P113719
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC03P113719 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC03P113719 Gene

Genomic Locations for GC03P113719 Gene
chr3:113,719,103-113,719,178
(GRCh38/hg38)
Size:
76 bases
Orientation:
Plus strand

Genomic View for GC03P113719 Gene

Genes around GC03P113719 on UCSC Golden Path with GeneCards custom track

GC03P113719 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC03P113719 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC03P113719 Gene

ORGUL Member Location for GC03P113719 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC03P113719 Gene

Proteins for GC03P113719 Gene

Post-translational modifications for GC03P113719 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC03P113719 Gene

Domains & Families for GC03P113719 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC03P113719 Gene

Function for GC03P113719 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC03P113719 Gene

Localization for GC03P113719 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC03P113719 Gene

Pathways & Interactions for GC03P113719 Gene

SuperPathways for GC03P113719 Gene

No Data Available

Interacting Proteins for GC03P113719 Gene

Gene Ontology (GO) - Biological Process for GC03P113719 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC03P113719 Gene

Drugs & Compounds for GC03P113719 Gene

No Compound Related Data Available

Transcripts for GC03P113719 Gene

fRNAdb Secondary structures for GC03P113719 Gene

  • FR405369
  • FR227233

Alternative Splicing Database (ASD) splice patterns (SP) for GC03P113719 Gene

No ASD Table

Relevant External Links for GC03P113719 Gene

GeneLoc Exon Structure for
GC03P113719

No data available for mRNA/cDNA for GC03P113719 Gene

Expression for GC03P113719 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC03P113719 Gene

Orthologs for GC03P113719 Gene

No data available for Orthologs and Evolution for GC03P113719 Gene

Paralogs for GC03P113719 Gene

No data available for Paralogs for GC03P113719 Gene

Variants for GC03P113719 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC03P113719 Gene

Disorders for GC03P113719 Gene

No disorders were found for GC03P113719 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC03P113719 Gene

Publications for GC03P113719 Gene

  1. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen JS … Haussler D (PLoS computational biology 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  3. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S … Stadler PF (Nature biotechnology 2005) 1

Products for GC03P113719 Gene

Sources for GC03P113719 Gene

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