Free for academic non-profit institutions. Other users need a Commercial license

Aliases for GC03P008442 Gene

Subcategory (RNA class) for GC03P008442 Gene

piRNA

Quality Score for this RNA gene is

6

Aliases for GC03P008442 Gene

No Aliases found

ORGUL Members for GC03P008442 Gene

No data available for External Ids for GC03P008442 Gene

Summaries for GC03P008442 Gene

GeneCards Summary for GC03P008442 Gene

GC03P008442 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for GC03P008442 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

View fRNAdb secondary structures for GC03P008442

Additional gene information for GC03P008442 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC03P008442 Gene

Genomics for GC03P008442 Gene

GeneHancer (GH) Regulatory Elements for GC03P008442 Gene

Promoters and enhancers for GC03P008442 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I008417 Enhancer 0.7 Ensembl 0.3 -22.1 -22054 0.2 CTCF ZNF384 ZNF2 RAD21 RFX5 ZNF316 ZNF143 SMC3 NFE2 MAFK RNU4ATAC17P ENSG00000231401 GC03P008442 LMCD1-AS1
GH03I008371 Enhancer 0.5 ENCODE 0.2 -68.2 -68195 0.1 FOSL1 ZBTB11 CBFA2T3 FOS ENSG00000231401 GC03P008442 LMCD1-AS1
GH03I008403 Enhancer 0.2 FANTOM5 0.3 -36.1 -36055 0.2 ENSG00000231401 RNU4ATAC17P GC03P008442 LMCD1-AS1
GH03I008393 Enhancer 0.2 FANTOM5 0.2 -45.7 -45665 0.3 ENSG00000231401 GC03P008442 LMCD1-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC03P008442 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC03P008442 Gene

Genomic Locations for GC03P008442 Gene
chr3:8,439,555-8,439,587
(GRCh38/hg38)
Size:
33 bases
Orientation:
Plus strand

Genomic View for GC03P008442 Gene

Genes around GC03P008442 on UCSC Golden Path with GeneCards custom track

GC03P008442 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC03P008442 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC03P008442 Gene

ORGUL Member Location for GC03P008442 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC03P008442 Gene

Proteins for GC03P008442 Gene

Post-translational modifications for GC03P008442 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC03P008442 Gene

Domains & Families for GC03P008442 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC03P008442 Gene

Function for GC03P008442 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC03P008442 Gene

Localization for GC03P008442 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC03P008442 Gene

Pathways & Interactions for GC03P008442 Gene

SuperPathways for GC03P008442 Gene

No Data Available

Interacting Proteins for GC03P008442 Gene

Gene Ontology (GO) - Biological Process for GC03P008442 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC03P008442 Gene

Drugs & Compounds for GC03P008442 Gene

No Compound Related Data Available

Transcripts for GC03P008442 Gene

fRNAdb Secondary structures for GC03P008442 Gene

  • FR304970
  • FR000524

Alternative Splicing Database (ASD) splice patterns (SP) for GC03P008442 Gene

No ASD Table

Relevant External Links for GC03P008442 Gene

GeneLoc Exon Structure for
GC03P008442

No data available for mRNA/cDNA for GC03P008442 Gene

Expression for GC03P008442 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC03P008442 Gene

Orthologs for GC03P008442 Gene

No data available for Orthologs and Evolution for GC03P008442 Gene

Paralogs for GC03P008442 Gene

No data available for Paralogs for GC03P008442 Gene

Variants for GC03P008442 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC03P008442 Gene

Disorders for GC03P008442 Gene

No disorders were found for GC03P008442 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC03P008442 Gene

Publications for GC03P008442 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for GC03P008442 Gene

Sources for GC03P008442 Gene

Content
Loading form....