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Aliases for GC03M128076 Gene

Subcategory (RNA class) for GC03M128076 Gene

snRNA

Quality Score for this RNA gene is

2

Aliases for GC03M128076 Gene

No Aliases found

ORGUL Members for GC03M128076 Gene

No data available for External Ids for GC03M128076 Gene

Summaries for GC03M128076 Gene

GeneCards Summary for GC03M128076 Gene

GC03M128076 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC03M128076 Gene - the ORGUL cluster for this gene includes several descriptions:

  • U2_snRNA: U2 is a small nuclear RNA (snRNA) component of the spliceosome (involved in pre-mRNA splicing). Complementary binding between U2 snRNA (in an area lying towards the 5' end but 3' to hairpin I) and the branchpoint sequence (BPS) of the intron results in the bulging out of an unpaired adenine, on the BPS, which initiates a nucleophilic attack at the intronic 5' splice site, thus starting the first of two transesterification reactions that mediate splicing.

  • U2 spliceosomal RNA: U2 is a small nuclear RNA (snRNA) component of the spliceosome (involved in pre-mRNA splicing). Complementary binding between U2 snRNA (in an area lying towards the 5' end but 3' to hairpin I) and the branchpoint sequence (BPS) of the intron results in the bulging out of an unpaired adenosine, on the BPS, which initiates a nucleophilic attack at the intronic 5' splice site, thus starting the first of two transesterification reactions that mediate splicing.

View fRNAdb secondary structures for GC03M128076

Additional gene information for GC03M128076 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC03M128076 Gene

Genomics for GC03M128076 Gene

GeneHancer (GH) Regulatory Elements for GC03M128076 Gene

Promoters and enhancers for GC03M128076 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I128074 Promoter/Enhancer 2 FANTOM5 Ensembl ENCODE dbSUPER 550.8 -1.5 -1545 3.7 PKNOX1 SMAD1 ATF1 SIN3A IRF4 ZNF766 GATA2 ARID2 ZNF207 ZNF143 GC03M128076 RNU2-37P RUVBL1-AS1 GATA2 SEC61A1 RUVBL1 DNAJB8 PIR39032
GH03I128073 Enhancer 0.6 ENCODE dbSUPER 550.8 +1.1 1133 1.2 CTCF JUN GC03M128076 RNU2-37P RUVBL1-AS1 SEC61A1 LOC102723759 RUVBL1
GH03I128051 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 0.3 +21.7 21730 4.8 SMAD1 FOXA2 ZFP64 ARID4B SIN3A DMAP1 YY1 POLR2B ZNF766 ZNF207 SEC61A1 GC03M128050 LOC102723759 PIR34686 RNU2-37P RUVBL1-AS1 GC03M128076
GH03I128070 Enhancer 0.4 dbSUPER 0.8 +4.3 4291 1.4 ZFHX2 POLR2A EGR2 SEC61A1 GC03M128076 RNU2-37P LOC102723759 RUVBL1
GH03I128058 Enhancer 0.7 ENCODE dbSUPER 0.4 +14.4 14400 4.4 PAF1 JUND POLR2A FOS SEC61A1 RNU6-823P PODXL2 EEFSEC ACAD9 LOC102723759 GC03M128076 RNU2-37P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC03M128076 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC03M128076 Gene

Genomic Locations for GC03M128076 Gene
chr3:128,075,072-128,075,249
(GRCh38/hg38)
Size:
178 bases
Orientation:
Minus strand

Genomic View for GC03M128076 Gene

Genes around GC03M128076 on UCSC Golden Path with GeneCards custom track

GC03M128076 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC03M128076 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC03M128076 Gene

ORGUL Member Location for GC03M128076 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC03M128076 Gene

Proteins for GC03M128076 Gene

Post-translational modifications for GC03M128076 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC03M128076 Gene

Domains & Families for GC03M128076 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC03M128076 Gene

Function for GC03M128076 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC03M128076 Gene

Localization for GC03M128076 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC03M128076 Gene

Pathways & Interactions for GC03M128076 Gene

SuperPathways for GC03M128076 Gene

No Data Available

Interacting Proteins for GC03M128076 Gene

Gene Ontology (GO) - Biological Process for GC03M128076 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC03M128076 Gene

Drugs & Compounds for GC03M128076 Gene

No Compound Related Data Available

Transcripts for GC03M128076 Gene

fRNAdb Secondary structures for GC03M128076 Gene

  • FR083479

Alternative Splicing Database (ASD) splice patterns (SP) for GC03M128076 Gene

No ASD Table

Relevant External Links for GC03M128076 Gene

GeneLoc Exon Structure for
GC03M128076

No data available for mRNA/cDNA for GC03M128076 Gene

Expression for GC03M128076 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC03M128076 Gene

Orthologs for GC03M128076 Gene

No data available for Orthologs and Evolution for GC03M128076 Gene

Paralogs for GC03M128076 Gene

No data available for Paralogs for GC03M128076 Gene

Variants for GC03M128076 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC03M128076 Gene

Disorders for GC03M128076 Gene

No disorders were found for GC03M128076 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC03M128076 Gene

Publications for GC03M128076 Gene

  1. A conserved pseudouridine modification in eukaryotic U2 snRNA induces a change in branch-site architecture. (PMID: 11424937) Newby MI … Greenbaum NL (RNA (New York, N.Y.) 2001) 1
  2. Crystal structure of a model branchpoint-U2 snRNA duplex containing bulged adenosines. (PMID: 11350032) Berglund JA … Schultz SC (RNA (New York, N.Y.) 2001) 1
  3. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  4. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

Products for GC03M128076 Gene

Sources for GC03M128076 Gene

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