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Aliases for GC02P233299 Gene

Subcategory (RNA class) for GC02P233299 Gene

scaRNA

Quality Score for this RNA gene is

17

Aliases for GC02P233299 Gene

No Aliases found

No data available for External Ids for GC02P233299 Gene

Summaries for GC02P233299 Gene

GeneCards Summary for GC02P233299 Gene

GC02P233299 is an RNA Gene, and is affiliated with the scaRNA class.

fRNAdb sequence ontologies for GC02P233299 Gene

  • snoRNA: A snoRNA (small nucleolar RNA) is any one of a class of small RNAs that are associated with the eukaryotic nucleus as components of small nucleolar ribonucleoproteins. They participate in the processing or modifications of many RNAs, mostly ribosomal RNAs (rRNAs) though snoRNAs are also known to target other classes of RNA, including spliceosomal RNAs, tRNAs, and mRNAs via a stretch of sequence that is complementary to a sequence in the targeted RNA.

View fRNAdb secondary structures for GC02P233299

Additional gene information for GC02P233299 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC02P233299 Gene

Genomics for GC02P233299 Gene

GeneHancer (GH) Regulatory Elements for GC02P233299 Gene

Promoters and enhancers for GC02P233299 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J233288 Enhancer 0.6 ENCODE 650.7 +0.3 275 0.2 SMARCE1 PKNOX1 ESRRA FOXA2 FOXA1 ZNF217 GATA3 CUX1 FOS GC02P233298 GC02P233299 GC02P233301 PIR49212 SCARNA6 GC02M233297 ATG16L1
GH02J233279 Enhancer 0.6 dbSUPER 0.4 -7.2 -7171 3.8 SMARCE1 NFIB DPF2 GATA3 CTBP1 GATA2 ZNF444 TCF7L2 SAG ATG16L1 USP40 GC02P233276 GC02P233278 GC02P233299 SCARNA5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC02P233299 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC02P233299 Gene

Genomic Locations for GC02P233299 Gene
chr2:233,288,675-233,288,941
(GRCh38/hg38)
Size:
267 bases
Orientation:
Plus strand

Genomic View for GC02P233299 Gene

Genes around GC02P233299 on UCSC Golden Path with GeneCards custom track

GC02P233299 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC02P233299 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC02P233299 Gene

ORGUL Member Location for GC02P233299 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC02P233299 Gene

Proteins for GC02P233299 Gene

Post-translational modifications for GC02P233299 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC02P233299 Gene

Domains & Families for GC02P233299 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC02P233299 Gene

Function for GC02P233299 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC02P233299 Gene

Localization for GC02P233299 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC02P233299 Gene

Pathways & Interactions for GC02P233299 Gene

SuperPathways for GC02P233299 Gene

No Data Available

Interacting Proteins for GC02P233299 Gene

Gene Ontology (GO) - Biological Process for GC02P233299 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC02P233299 Gene

Drugs & Compounds for GC02P233299 Gene

No Compound Related Data Available

Transcripts for GC02P233299 Gene

fRNAdb Secondary structures for GC02P233299 Gene

  • FR022918
  • FR015998

Alternative Splicing Database (ASD) splice patterns (SP) for GC02P233299 Gene

No ASD Table

Relevant External Links for GC02P233299 Gene

GeneLoc Exon Structure for
GC02P233299

No data available for mRNA/cDNA for GC02P233299 Gene

Expression for GC02P233299 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC02P233299 Gene

Orthologs for GC02P233299 Gene

No data available for Orthologs and Evolution for GC02P233299 Gene

Paralogs for GC02P233299 Gene

No data available for Paralogs for GC02P233299 Gene

Variants for GC02P233299 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC02P233299 Gene

Disorders for GC02P233299 Gene

No disorders were found for GC02P233299 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC02P233299 Gene

Publications for GC02P233299 Gene

  1. The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts. (PMID: 18089548) Genome Information Integration Project And H-Invitational 2 … Gojobori T (Nucleic acids research 2008) 1
  2. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 1
  3. NONCODE: an integrated knowledge database of non-coding RNAs. (PMID: 15608158) Liu C … Chen R (Nucleic acids research 2005) 1
  4. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  5. Integrative annotation of 21,037 human genes validated by full-length cDNA clones. (PMID: 15103394) Imanishi T … Sugano S (PLoS biology 2004) 1

Products for GC02P233299 Gene

Sources for GC02P233299 Gene

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