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Aliases for GC02P230588 Gene

Subcategory (RNA class) for GC02P230588 Gene

snRNA

Quality Score for this RNA gene is

15

Aliases for GC02P230588 Gene

No Aliases found

ORGUL Members for GC02P230588 Gene

No data available for External Ids for GC02P230588 Gene

Summaries for GC02P230588 Gene

GeneCards Summary for GC02P230588 Gene

GC02P230588 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC02P230588 Gene

  • U6_snRNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA.

Additional gene information for GC02P230588 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC02P230588 Gene

Genomics for GC02P230588 Gene

GeneHancer (GH) Regulatory Elements for GC02P230588 Gene

Promoters and enhancers for GC02P230588 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J230588 Enhancer 1 ENCODE dbSUPER 0.7 +2.4 2411 2.1 PKNOX1 SMAD1 RB1 STAT5A BMI1 BATF RAD21 IRF4 YY1 ZNF207 NCL SP110 TRIP12 ENSG00000225963 TPM3P8 GC02P230588 LINC01907
GH02J230599 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +14.6 14629 5.1 HDGF FOXA2 SMAD1 BATF KLF5 IRF4 ATF7 ETV6 BCLAF1 IKZF2 NCL TRIP12 SLC16A14 SP140 SP110 SP140L GPR55 SP100 GC02P230588 LINC01907
GH02J230610 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.3 +24.1 24061 1.9 PKNOX1 ARNT IRF4 ZSCAN9 RAD21 ARID2 ZNF143 ATF7 ETV6 BCLAF1 GC02P230588 LINC01907
GH02J230656 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.2 +73.7 73722 8.4 HDGF PKNOX1 SMAD1 ARNT YBX1 IRF4 POLR2B ZNF766 ZNF207 ZNF143 ENSG00000224376 CAB39 LOC101928816 RNU6-451P ZBTB8OSP2 LINC00471 SP110 SP140 GPR55 ARMC9
GH02J230614 Enhancer 1.1 FANTOM5 ENCODE dbSUPER 0.3 +28.2 28153 1.1 PKNOX1 SMAD1 JUNB KLF5 JUND EGR1 POLR2A IKZF1 NBN ZNF207 GPR55 SP110 SP140 GC02P230588 LINC01907
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC02P230588 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC02P230588 Gene

Genomic Locations for GC02P230588 Gene
chr2:230,587,124-230,587,227
(GRCh38/hg38)
Size:
104 bases
Orientation:
Plus strand

Genomic View for GC02P230588 Gene

Genes around GC02P230588 on UCSC Golden Path with GeneCards custom track

GC02P230588 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC02P230588 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC02P230588 Gene

Proteins for GC02P230588 Gene

Post-translational modifications for GC02P230588 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC02P230588 Gene

Domains & Families for GC02P230588 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC02P230588 Gene

Function for GC02P230588 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC02P230588 Gene

Localization for GC02P230588 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC02P230588 Gene

Pathways & Interactions for GC02P230588 Gene

SuperPathways for GC02P230588 Gene

No Data Available

Interacting Proteins for GC02P230588 Gene

Gene Ontology (GO) - Biological Process for GC02P230588 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC02P230588 Gene

Drugs & Compounds for GC02P230588 Gene

No Compound Related Data Available

Transcripts for GC02P230588 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for GC02P230588 Gene

No ASD Table

Relevant External Links for GC02P230588 Gene

GeneLoc Exon Structure for
GC02P230588

No data available for mRNA/cDNA for GC02P230588 Gene

Expression for GC02P230588 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC02P230588 Gene

Orthologs for GC02P230588 Gene

No data available for Orthologs and Evolution for GC02P230588 Gene

Paralogs for GC02P230588 Gene

No data available for Paralogs for GC02P230588 Gene

Variants for GC02P230588 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC02P230588 Gene

Disorders for GC02P230588 Gene

No disorders were found for GC02P230588 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC02P230588 Gene

Publications for GC02P230588 Gene

  1. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  2. Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions. (PMID: 1960724) Orum H … Engberg J (Journal of molecular biology 1991) 1
  3. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

Products for GC02P230588 Gene

Sources for GC02P230588 Gene

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