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Aliases for GC02P211536 Gene

Subcategory (RNA class) for GC02P211536 Gene

rRNA

Quality Score for this RNA gene is

15

Aliases for GC02P211536 Gene

No Aliases found

ORGUL Members for GC02P211536 Gene

No data available for External Ids for GC02P211536 Gene

Summaries for GC02P211536 Gene

GeneCards Summary for GC02P211536 Gene

GC02P211536 is an RNA Gene, and is affiliated with the rRNA class.

fRNAdb sequence ontologies for GC02P211536 Gene

  • rRNA_5S: 5S ribosomal RNA (5S rRNA) is a component of the large ribosomal subunit in both prokaryotes and eukaryotes. In eukaryotes, it is synthesised by RNA polymerase III (the other eukaryotic rRNAs are cleaved from a 45S precursor synthesised by RNA polymerase I). In Xenopus oocytes, it has been shown that fingers 4-7 of the nine-zinc finger transcription factor TFIIIA can bind to the central region of 5S RNA. Thus, in addition to positively regulating 5S rRNA transcription, TFIIIA also stabilises 5S rRNA until it is required for transcription.

Additional gene information for GC02P211536 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC02P211536 Gene

Genomics for GC02P211536 Gene

GeneHancer (GH) Regulatory Elements for GC02P211536 Gene

Promoters and enhancers for GC02P211536 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J211407 Enhancer 0.7 ENCODE 0.1 -127.3 -127266 1.8 NCOA3 SOX13 FOXA2 NFIB JUN MAX CTBP1 GATA3 FOSL2 FOS RPS27P10 GC02P211536
GH02J211496 Enhancer 0.2 FANTOM5 0.3 -39.1 -39112 0 GC02P211536 RPS27P10
GH02J211367 Enhancer 0.6 ENCODE 0.1 -167.8 -167815 0.8 PKNOX1 SMAD1 NR2F1 EBF1 MEF2B ELF1 BATF ATF2 ZNF217 TARDBP RPS27P10 GC02P211536
GH02J211302 Enhancer 0.6 UCNEbase 0.1 -232.8 -232778 0.2 ATF7 ATF2 RPS27P10 GC02P211536
GH02J211390 Enhancer 0.4 VISTA 0.1 -144.4 -144378 2.3 RPS27P10 GC02P211536
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC02P211536 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC02P211536 Gene

Genomic Locations for GC02P211536 Gene
chr2:211,535,652-211,535,769
(GRCh38/hg38)
Size:
118 bases
Orientation:
Plus strand

Genomic View for GC02P211536 Gene

Genes around GC02P211536 on UCSC Golden Path with GeneCards custom track

GC02P211536 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC02P211536 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC02P211536 Gene

Proteins for GC02P211536 Gene

Post-translational modifications for GC02P211536 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC02P211536 Gene

Domains & Families for GC02P211536 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC02P211536 Gene

Function for GC02P211536 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC02P211536 Gene

Localization for GC02P211536 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC02P211536 Gene

Pathways & Interactions for GC02P211536 Gene

SuperPathways for GC02P211536 Gene

No Data Available

Interacting Proteins for GC02P211536 Gene

Gene Ontology (GO) - Biological Process for GC02P211536 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC02P211536 Gene

Drugs & Compounds for GC02P211536 Gene

No Compound Related Data Available

Transcripts for GC02P211536 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for GC02P211536 Gene

No ASD Table

Relevant External Links for GC02P211536 Gene

GeneLoc Exon Structure for
GC02P211536

No data available for mRNA/cDNA for GC02P211536 Gene

Expression for GC02P211536 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC02P211536 Gene

Orthologs for GC02P211536 Gene

No data available for Orthologs and Evolution for GC02P211536 Gene

Paralogs for GC02P211536 Gene

No data available for Paralogs for GC02P211536 Gene

Variants for GC02P211536 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC02P211536 Gene

Disorders for GC02P211536 Gene

No disorders were found for GC02P211536 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC02P211536 Gene

Publications for GC02P211536 Gene

  1. 5S Ribosomal RNA Database. (PMID: 11752286) Szymanski M … Barciszewski J (Nucleic acids research 2002) 1
  2. Crystal structure of the ribosome at 5.5 A resolution. (PMID: 11283358) Yusupov MM … Noller HF (Science (New York, N.Y.) 2001) 1
  3. The role of the central zinc fingers of transcription factor IIIA in binding to 5 S RNA. (PMID: 10926492) Searles MA … Klug A (Journal of molecular biology 2000) 1

Products for GC02P211536 Gene

Sources for GC02P211536 Gene

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