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Aliases for GC02P200777 Gene

Subcategory (RNA class) for GC02P200777 Gene

snRNA

Quality Score for this RNA gene is

2

Aliases for GC02P200777 Gene

No Aliases found

ORGUL Members for GC02P200777 Gene

No data available for External Ids for GC02P200777 Gene

Summaries for GC02P200777 Gene

GeneCards Summary for GC02P200777 Gene

GC02P200777 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC02P200777 Gene

  • U1_snRNA: U1 is a small nuclear RNA (snRNA) component of the spliceosome (involved in pre-mRNA splicing). Its 5' end forms complementary base pairs with the 5' splice junction, thus defining the 5' donor site of an intron. There are significant differences in sequence and secondary structure between metazoan and yeast U1 snRNAs, the latter being much longer (568 nucleotides as compared to 164 nucleotides in human). Nevertheless, secondary structure predictions suggest that all U1 snRNAs share a 'common core' consisting of helices I, II, the proximal region of III, and IV.

Additional gene information for GC02P200777 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC02P200777 Gene

Genomics for GC02P200777 Gene

GeneHancer (GH) Regulatory Elements for GC02P200777 Gene

Promoters and enhancers for GC02P200777 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I200763 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.4 -10.0 -10000 4.8 ATF1 INSM2 KLF17 ZNF76 SIN3A BATF ZNF335 GLIS2 ZNF366 FOS PPIL3 BZW1 CASP8 ALS2CR12 GC02P200777 LINC01792 AOX2P GC02P200578
GH02I200754 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.4 -19.0 -19015 3.8 FOXA2 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF48 YY1 SLC30A9 FOS BZW1 LOC101927795 AOX1 PPIL3 CASP8 ALS2CR12 GC02P200777 LINC01792 AOX2P GC02P200578
GH02I200745 Enhancer 1.1 Ensembl ENCODE 0.3 -28.0 -27997 3.4 FOXA2 ARID4B DMAP1 ZNF48 YY1 ZNF121 FOS RXRA SP5 MIER2 RNU1-133P AOX1 PPIL3 ALS2CR12 LINC01792 GC02P200777 AOX2P AOX3P-AOX2P GC02P200578
GH02I200740 Enhancer 1 Ensembl ENCODE 0.3 -33.6 -33646 2.4 ELF3 FOXA2 ARID4B ZNF48 ZSCAN9 RFX5 RARA CREM THAP11 MXD4 RNU1-133P ALS2CR12 LINC01792 GC02P200777 AOX2P AOX3P-AOX2P GC02P200578
GH02I200735 Enhancer 0.7 ENCODE 0.3 -39.7 -39720 0.1 ELF3 SOX13 CTCF FOXA2 SAP130 ARID4B FEZF1 RAD21 TEAD3 ZSCAN5C LINC01792 BZW1 LOC101927795 AOX1 GC02P200777 AOX2P AOX3P-AOX2P GC02P200578
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC02P200777 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC02P200777 Gene

Genomic Locations for GC02P200777 Gene
chr2:200,775,583-200,775,750
(GRCh38/hg38)
Size:
168 bases
Orientation:
Plus strand

Genomic View for GC02P200777 Gene

Genes around GC02P200777 on UCSC Golden Path with GeneCards custom track

GC02P200777 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC02P200777 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC02P200777 Gene

Proteins for GC02P200777 Gene

Post-translational modifications for GC02P200777 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC02P200777 Gene

Domains & Families for GC02P200777 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC02P200777 Gene

Function for GC02P200777 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC02P200777 Gene

Localization for GC02P200777 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC02P200777 Gene

Pathways & Interactions for GC02P200777 Gene

SuperPathways for GC02P200777 Gene

No Data Available

Interacting Proteins for GC02P200777 Gene

Gene Ontology (GO) - Biological Process for GC02P200777 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC02P200777 Gene

Drugs & Compounds for GC02P200777 Gene

No Compound Related Data Available

Transcripts for GC02P200777 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC02P200777 Gene

No ASD Table

Relevant External Links for GC02P200777 Gene

GeneLoc Exon Structure for
GC02P200777

No data available for mRNA/cDNA for GC02P200777 Gene

Expression for GC02P200777 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC02P200777 Gene

Orthologs for GC02P200777 Gene

No data available for Orthologs and Evolution for GC02P200777 Gene

Paralogs for GC02P200777 Gene

No data available for Paralogs for GC02P200777 Gene

Variants for GC02P200777 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC02P200777 Gene

Disorders for GC02P200777 Gene

No disorders were found for GC02P200777 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC02P200777 Gene

Publications for GC02P200777 Gene

  1. Two functionally distinct steps mediate high affinity binding of U1A protein to U1 hairpin II RNA. (PMID: 11297556) Katsamba PS … Laird-Offringa IA (The Journal of biological chemistry 2001) 1
  2. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  3. Crystal structure at 1.92 A resolution of the RNA-binding domain of the U1A spliceosomal protein complexed with an RNA hairpin. (PMID: 7984237) Oubridge C … Nagai K (Nature 1994) 1
  4. Saccharomyces cerevisiae U1 small nuclear RNA secondary structure contains both universal and yeast-specific domains. (PMID: 2405391) Kretzner L … Rosbash M (Proceedings of the National Academy of Sciences of the United States of America 1990) 1

Products for GC02P200777 Gene

Sources for GC02P200777 Gene

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