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Aliases for GC02P169728 Gene

Subcategory (RNA class) for GC02P169728 Gene

snoRNA

Quality Score for this RNA gene is

2

Aliases for GC02P169728 Gene

No Aliases found

ORGUL Members for GC02P169728 Gene

No data available for External Ids for GC02P169728 Gene

Summaries for GC02P169728 Gene

GeneCards Summary for GC02P169728 Gene

GC02P169728 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC02P169728 Gene

  • H_ACA_box_snoRNA: Members of the box H/ACA family contain an ACA triplet, exactly 3 nt upstream from the 3' end and an H-box in a hinge region that links two structurally similar functional domains of the molecule. Both boxes are important for snoRNA biosynthesis and function. A few box H/ACA snoRNAs are involved in rRNA processing; most others are known or predicted to participate in selection of uridine nucleosides in rRNA to be converted to pseudouridines. Site selection is mediated by direct base pairing of the snoRNA with rRNA through one or both targeting domains.

Additional gene information for GC02P169728 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC02P169728 Gene

Genomics for GC02P169728 Gene

GeneHancer (GH) Regulatory Elements for GC02P169728 Gene

Promoters and enhancers for GC02P169728 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I169715 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE 0.4 -11.3 -11311 2.8 FOXA2 MLX ARNT ARID4B DMAP1 YY1 SLC30A9 SP5 MXD4 ZNF592 PHOSPHO2 FASTKD1 CCDC173 ENSG00000229827 GC02P169728 PHOSPHO2-KLHL23 KLHL23
GH02I169693 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 0.3 -33.1 -33058 2.7 HDGF PKNOX1 SMAD1 FOXA2 ARID4B SIN3A DMAP1 ZBTB7B YY1 SLC30A9 PHOSPHO2 CCDC173 PHOSPHO2-KLHL23 KLHL23 FASTKD1 SSB GC02P169728
GH02I169709 Enhancer 0.9 ENCODE 0.4 -16.3 -16322 4.1 ATF1 ZNF766 ATF7 CAVIN1 ZNF592 MEF2D ATF4 GMEB1 ZNF184 SMARCA4 PHOSPHO2 PPIG SSB CCDC173 CYB5AP2 METTL5 UBR3 PHOSPHO2-KLHL23 GC02P169728 KLHL23
GH02I169703 Enhancer 0.5 ENCODE 0.3 -22.8 -22772 3.2 FOXA2 JUND CEBPB HNF4A ZNF18 GABPA ZNF558 PHOSPHO2 CCDC173 SSB CYB5AP2 KLHL23 PHOSPHO2-KLHL23 GC02P169728
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC02P169728 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC02P169728 Gene

Genomic Locations for GC02P169728 Gene
chr2:169,727,871-169,728,003
(GRCh38/hg38)
Size:
133 bases
Orientation:
Plus strand

Genomic View for GC02P169728 Gene

Genes around GC02P169728 on UCSC Golden Path with GeneCards custom track

GC02P169728 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC02P169728 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC02P169728 Gene

Proteins for GC02P169728 Gene

Post-translational modifications for GC02P169728 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC02P169728 Gene

Domains & Families for GC02P169728 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC02P169728 Gene

Function for GC02P169728 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC02P169728 Gene

Localization for GC02P169728 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC02P169728 Gene

Pathways & Interactions for GC02P169728 Gene

SuperPathways for GC02P169728 Gene

No Data Available

Interacting Proteins for GC02P169728 Gene

Gene Ontology (GO) - Biological Process for GC02P169728 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC02P169728 Gene

Drugs & Compounds for GC02P169728 Gene

No Compound Related Data Available

Transcripts for GC02P169728 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC02P169728 Gene

No ASD Table

Relevant External Links for GC02P169728 Gene

GeneLoc Exon Structure for
GC02P169728

No data available for mRNA/cDNA for GC02P169728 Gene

Expression for GC02P169728 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC02P169728 Gene

Orthologs for GC02P169728 Gene

No data available for Orthologs and Evolution for GC02P169728 Gene

Paralogs for GC02P169728 Gene

No data available for Paralogs for GC02P169728 Gene

Variants for GC02P169728 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC02P169728 Gene

Disorders for GC02P169728 Gene

No disorders were found for GC02P169728 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC02P169728 Gene

Publications for GC02P169728 Gene

  1. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 1

Products for GC02P169728 Gene

Sources for GC02P169728 Gene

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