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Aliases for GC02P135138 Gene

Subcategory (RNA class) for GC02P135138 Gene


Quality Score for this RNA gene is


Aliases for GC02P135138 Gene

No Aliases found

ORGUL Members for GC02P135138 Gene

No data available for External Ids for GC02P135138 Gene

Summaries for GC02P135138 Gene

GeneCards Summary for GC02P135138 Gene

GC02P135138 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC02P135138 Gene - the ORGUL cluster for this gene includes several descriptions:

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

  • H_ACA_box_snoRNA: Members of the box H/ACA family contain an ACA triplet, exactly 3 nt upstream from the 3' end and an H-box in a hinge region that links two structurally similar functional domains of the molecule. Both boxes are important for snoRNA biosynthesis and function. A few box H/ACA snoRNAs are involved in rRNA processing; most others are known or predicted to participate in selection of uridine nucleosides in rRNA to be converted to pseudouridines. Site selection is mediated by direct base pairing of the snoRNA with rRNA through one or both targeting domains.

View fRNAdb secondary structures for GC02P135138

Additional gene information for GC02P135138 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC02P135138 Gene

Genomics for GC02P135138 Gene

GeneHancer (GH) Regulatory Elements for GC02P135138 Gene

Promoters and enhancers for GC02P135138 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J135051 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 0.2 -83.0 -83031 3.8 HDGF PKNOX1 SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 IRF4 YY1 RAB3GAP1 MAP3K19 CCNT2 UBXN4 DARS ZRANB3 GC02P135138
GH02J135124 Enhancer 0.6 ENCODE 0.4 -10.9 -10928 2.4 SOX6 JUN MAFG CEBPB CEBPG ZEB2 EP300 FOSL1 ATF4 JUND RAB3GAP1 MAP3K19 ZRANB3 GC02P135138
GH02J135092 Enhancer 0.5 ENCODE 0.3 -42.8 -42793 1.7 ELF3 FEZF1 HNF4A ZNF843 MAP3K19 RAB3GAP1 SNORA40B ZRANB3 GC02P135138
GH02J135073 Enhancer 0.5 ENCODE 0.2 -62.2 -62246 1.2 SMARCE1 ZNF217 PKNOX1 ZNF687 DPF2 HNF4A KLF4 MAP3K19 ZRANB3 RAB3GAP1 GC02P135138
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC02P135138 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC02P135138 Gene

Genomic Locations for GC02P135138 Gene
129 bases
Plus strand

Genomic View for GC02P135138 Gene

Genes around GC02P135138 on UCSC Golden Path with GeneCards custom track

GC02P135138 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC02P135138 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC02P135138 Gene

ORGUL Member Location for GC02P135138 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC02P135138 Gene

Proteins for GC02P135138 Gene

Post-translational modifications for GC02P135138 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC02P135138 Gene

Domains & Families for GC02P135138 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC02P135138 Gene

Function for GC02P135138 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC02P135138 Gene

Localization for GC02P135138 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC02P135138 Gene

Pathways & Interactions for GC02P135138 Gene

SuperPathways for GC02P135138 Gene

No Data Available

Interacting Proteins for GC02P135138 Gene

Gene Ontology (GO) - Biological Process for GC02P135138 Gene


No data available for Pathways by source and SIGNOR curated interactions for GC02P135138 Gene

Drugs & Compounds for GC02P135138 Gene

No Compound Related Data Available

Transcripts for GC02P135138 Gene

fRNAdb Secondary structures for GC02P135138 Gene

  • FR070811
  • FR379632

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for GC02P135138 Gene

No ASD Table

Relevant External Links for GC02P135138 Gene

GeneLoc Exon Structure for

No data available for mRNA/cDNA for GC02P135138 Gene

Expression for GC02P135138 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC02P135138 Gene

Orthologs for GC02P135138 Gene

No data available for Orthologs and Evolution for GC02P135138 Gene

Paralogs for GC02P135138 Gene

No data available for Paralogs for GC02P135138 Gene

Variants for GC02P135138 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC02P135138 Gene

Disorders for GC02P135138 Gene

No disorders were found for GC02P135138 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC02P135138 Gene

Publications for GC02P135138 Gene

  1. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen JS … Haussler D (PLoS computational biology 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  3. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 1
  4. Mapping to nucleotide resolution of pseudouridine residues in large subunit ribosomal RNAs from representative eukaryotes, prokaryotes, archaebacteria, mitochondria and chloroplasts. (PMID: 9047361) Ofengand J … Bakin A (Journal of molecular biology 1997) 1

Products for GC02P135138 Gene

Sources for GC02P135138 Gene

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