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Aliases for GC02P085544 Gene

Subcategory (RNA class) for GC02P085544 Gene

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Quality Score for this RNA gene is

13.4

Aliases for GC02P085544 Gene

No Aliases found

ORGUL Members for GC02P085544 Gene

No data available for External Ids for GC02P085544 Gene

Summaries for GC02P085544 Gene

GeneCards Summary for GC02P085544 Gene

GC02P085544 is an RNA Gene, and is affiliated with the undefined RNA class.

fRNAdb sequence ontologies for GC02P085544 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for GC02P085544

Additional gene information for GC02P085544 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC02P085544 Gene

Genomics for GC02P085544 Gene

GeneHancer (GH) Regulatory Elements for GC02P085544 Gene

Promoters and enhancers for GC02P085544 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J085545 Enhancer 1 ENCODE dbSUPER 650.7 +1.8 1818 1.2 FOXA2 FUS MZF1 SIN3A DNMT3B THRB ZNF48 ZNF121 POLR2B E2F8 GC02P085544 GC02P085546 USP39 SNORD94 GGCX KDM3A CAPG SH2D6 TMEM150A RNU7-64P
GH02J085544 Enhancer 0.8 ENCODE dbSUPER 650.7 -0.2 -222 0.2 ZNF189 FEZF1 OSR2 SSRP1 POLR2A ZNF629 WT1 ZBTB17 SP7 SUPT5H GC02P085546 GC02P085544 CAPG SH2D6 USP39 TMEM150A RNU7-64P RN7SL251P PIR40998 MAT2A
GH02J085543 Enhancer 0.6 ENCODE dbSUPER 650.7 -1.4 -1402 0.2 POLR2A SCRT2 PIR40998 GC02P085544 SH2D6 CAPG MAT2A
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC02P085544 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC02P085544 Gene

Genomic Locations for GC02P085544 Gene
chr2:85,544,735-85,544,833
(GRCh38/hg38)
Size:
99 bases
Orientation:
Plus strand

Genomic View for GC02P085544 Gene

Genes around GC02P085544 on UCSC Golden Path with GeneCards custom track

GC02P085544 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC02P085544 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC02P085544 Gene

ORGUL Member Location for GC02P085544 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC02P085544 Gene

Proteins for GC02P085544 Gene

Post-translational modifications for GC02P085544 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC02P085544 Gene

Domains & Families for GC02P085544 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC02P085544 Gene

Function for GC02P085544 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC02P085544 Gene

Localization for GC02P085544 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC02P085544 Gene

Pathways & Interactions for GC02P085544 Gene

SuperPathways for GC02P085544 Gene

No Data Available

Interacting Proteins for GC02P085544 Gene

Gene Ontology (GO) - Biological Process for GC02P085544 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC02P085544 Gene

Drugs & Compounds for GC02P085544 Gene

No Compound Related Data Available

Transcripts for GC02P085544 Gene

fRNAdb Secondary structures for GC02P085544 Gene

  • FR326678
  • FR150136

Alternative Splicing Database (ASD) splice patterns (SP) for GC02P085544 Gene

No ASD Table

Relevant External Links for GC02P085544 Gene

GeneLoc Exon Structure for
GC02P085544

No data available for mRNA/cDNA for GC02P085544 Gene

Expression for GC02P085544 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC02P085544 Gene

Orthologs for GC02P085544 Gene

No data available for Orthologs and Evolution for GC02P085544 Gene

Paralogs for GC02P085544 Gene

No data available for Paralogs for GC02P085544 Gene

Variants for GC02P085544 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC02P085544 Gene

Disorders for GC02P085544 Gene

No disorders were found for GC02P085544 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC02P085544 Gene

Publications for GC02P085544 Gene

  1. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen JS … Haussler D (PLoS computational biology 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  3. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S … Stadler PF (Nature biotechnology 2005) 1

Products for GC02P085544 Gene

Sources for GC02P085544 Gene

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