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Aliases for GC02P075627 Gene

Subcategory (RNA class) for GC02P075627 Gene

snoRNA

Quality Score for this RNA gene is

15

Aliases for GC02P075627 Gene

No Aliases found

ORGUL Members for GC02P075627 Gene

No data available for External Ids for GC02P075627 Gene

Summaries for GC02P075627 Gene

GeneCards Summary for GC02P075627 Gene

GC02P075627 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC02P075627 Gene

  • U3_snoRNA: U3 snoRNA is a member of the box C/D class of small nucleolar RNAs. The U3 snoRNA secondary structure is characterised by a small 5' domain (with boxes A and A'), and a larger 3' domain (with boxes B, C, C', and D), the two domains being linked by a single-stranded hinge. Boxes B and C form the B/C motif, which appears to be exclusive to U3 snoRNAs, and boxes C' and D form the C'/D motif. The latter is functionally similar to the C/D motifs found in other snoRNAs. The 5' domain and the hinge region act as a pre-rRNA-binding domain. The 3' domain has conserved protein-binding sites. Both the box B/C and box C'/D motifs are sufficient for nuclear retention of U3 snoRNA. The box C'/D motif is also necessary for nucleolar localization, stability and hypermethylation of U3 snoRNA. Both box B/C and C'/D motifs are involved in specific protein interactions and are necessary for the rRNA processing functions of U3 snoRNA.

Additional gene information for GC02P075627 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC02P075627 Gene

Genomics for GC02P075627 Gene

GeneHancer (GH) Regulatory Elements for GC02P075627 Gene

Promoters and enhancers for GC02P075627 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J075640 Enhancer 1 Ensembl ENCODE 0.4 +13.0 12976 0.5 ARID4B SIN3A RAD21 ARID2 ZNF143 RUNX3 THAP11 ZNF362 ZNF654 ZBTB25 GCFC2 MRPL19 GC02P075627
GH02J075632 Enhancer 0.5 ENCODE 0.7 +4.6 4647 1.1 ZNF512 MAFG NFE2 EMSY NFE2L2 MRPL19 GC02P075627
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC02P075627 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC02P075627 Gene

Genomic Locations for GC02P075627 Gene
chr2:75,627,952-75,628,167
(GRCh38/hg38)
Size:
216 bases
Orientation:
Plus strand

Genomic View for GC02P075627 Gene

Genes around GC02P075627 on UCSC Golden Path with GeneCards custom track

GC02P075627 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC02P075627 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC02P075627 Gene

Proteins for GC02P075627 Gene

Post-translational modifications for GC02P075627 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC02P075627 Gene

Domains & Families for GC02P075627 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC02P075627 Gene

Function for GC02P075627 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC02P075627 Gene

Localization for GC02P075627 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC02P075627 Gene

Pathways & Interactions for GC02P075627 Gene

SuperPathways for GC02P075627 Gene

No Data Available

Interacting Proteins for GC02P075627 Gene

Gene Ontology (GO) - Biological Process for GC02P075627 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC02P075627 Gene

Drugs & Compounds for GC02P075627 Gene

No Compound Related Data Available

Transcripts for GC02P075627 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC02P075627 Gene

No ASD Table

Relevant External Links for GC02P075627 Gene

GeneLoc Exon Structure for
GC02P075627

No data available for mRNA/cDNA for GC02P075627 Gene

Expression for GC02P075627 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC02P075627 Gene

Orthologs for GC02P075627 Gene

No data available for Orthologs and Evolution for GC02P075627 Gene

Paralogs for GC02P075627 Gene

No data available for Paralogs for GC02P075627 Gene

Variants for GC02P075627 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC02P075627 Gene

Disorders for GC02P075627 Gene

No disorders were found for GC02P075627 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC02P075627 Gene

Publications for GC02P075627 Gene

  1. Nuclear retention elements of U3 small nucleolar RNA. (PMID: 10567566) Speckmann W … Terns MP (Molecular and cellular biology 1999) 1
  2. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1

Products for GC02P075627 Gene

Sources for GC02P075627 Gene

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