Free for academic non-profit institutions. Other users need a Commercial license

Aliases for GC02P072722 Gene

Subcategory (RNA class) for GC02P072722 Gene

snRNA

Quality Score for this RNA gene is

15

Aliases for GC02P072722 Gene

No Aliases found

ORGUL Members for GC02P072722 Gene

No data available for External Ids for GC02P072722 Gene

Summaries for GC02P072722 Gene

GeneCards Summary for GC02P072722 Gene

GC02P072722 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC02P072722 Gene

  • U2_snRNA: U2 is a small nuclear RNA (snRNA) component of the spliceosome (involved in pre-mRNA splicing). Complementary binding between U2 snRNA (in an area lying towards the 5' end but 3' to hairpin I) and the branchpoint sequence (BPS) of the intron results in the bulging out of an unpaired adenine, on the BPS, which initiates a nucleophilic attack at the intronic 5' splice site, thus starting the first of two transesterification reactions that mediate splicing.

Additional gene information for GC02P072722 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC02P072722 Gene

Genomics for GC02P072722 Gene

GeneHancer (GH) Regulatory Elements for GC02P072722 Gene

Promoters and enhancers for GC02P072722 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J072718 Enhancer 0.8 Ensembl ENCODE 0.7 -2.3 -2327 1.7 SIX4 USF1 FOXA2 NANOG MAX FOXA1 PRDM6 ZNF350 CUX1 SP7 ENSG00000212378 GC02P072722 EXOC6B GC02P072603
GH02J072694 Enhancer 1.2 Ensembl ENCODE 0.3 -26.8 -26778 0.8 FOXA2 MLX ARID4B DMAP1 ZNF48 YY1 TCF12 NFKBIZ RXRA SP5 GC02P072722 GC02P072603 EXOC6B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC02P072722 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC02P072722 Gene

Genomic Locations for GC02P072722 Gene
chr2:72,721,805-72,722,003
(GRCh38/hg38)
Size:
199 bases
Orientation:
Plus strand

Genomic View for GC02P072722 Gene

Genes around GC02P072722 on UCSC Golden Path with GeneCards custom track

GC02P072722 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC02P072722 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC02P072722 Gene

Proteins for GC02P072722 Gene

Post-translational modifications for GC02P072722 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC02P072722 Gene

Domains & Families for GC02P072722 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC02P072722 Gene

Function for GC02P072722 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC02P072722 Gene

Localization for GC02P072722 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC02P072722 Gene

Pathways & Interactions for GC02P072722 Gene

SuperPathways for GC02P072722 Gene

No Data Available

Interacting Proteins for GC02P072722 Gene

Gene Ontology (GO) - Biological Process for GC02P072722 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC02P072722 Gene

Drugs & Compounds for GC02P072722 Gene

No Compound Related Data Available

Transcripts for GC02P072722 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for GC02P072722 Gene

No ASD Table

Relevant External Links for GC02P072722 Gene

GeneLoc Exon Structure for
GC02P072722

No data available for mRNA/cDNA for GC02P072722 Gene

Expression for GC02P072722 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC02P072722 Gene

Orthologs for GC02P072722 Gene

No data available for Orthologs and Evolution for GC02P072722 Gene

Paralogs for GC02P072722 Gene

No data available for Paralogs for GC02P072722 Gene

Variants for GC02P072722 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC02P072722 Gene

Disorders for GC02P072722 Gene

No disorders were found for GC02P072722 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC02P072722 Gene

Publications for GC02P072722 Gene

  1. Crystal structure of a model branchpoint-U2 snRNA duplex containing bulged adenosines. (PMID: 11350032) Berglund JA … Schultz SC (RNA (New York, N.Y.) 2001) 1
  2. A conserved pseudouridine modification in eukaryotic U2 snRNA induces a change in branch-site architecture. (PMID: 11424937) Newby MI … Greenbaum NL (RNA (New York, N.Y.) 2001) 1
  3. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  4. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

Products for GC02P072722 Gene

Sources for GC02P072722 Gene

Content
Loading form....