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Aliases for GC02M233380 Gene

Subcategory (RNA class) for GC02M233380 Gene

Y RNA

Quality Score for this RNA gene is

15

Aliases for GC02M233380 Gene

No Aliases found

ORGUL Members for GC02M233380 Gene

No data available for External Ids for GC02M233380 Gene

Summaries for GC02M233380 Gene

GeneCards Summary for GC02M233380 Gene

GC02M233380 is an RNA Gene, and is affiliated with the Y RNA class.

Additional gene information for GC02M233380 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GC02M233380 Gene

Genomics for GC02M233380 Gene

GeneHancer (GH) Regulatory Elements for GC02M233380 Gene

Promoters and enhancers for GC02M233380 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J233378 Enhancer 0.7 dbSUPER 650.7 -0.3 -272 3.6 EBF1 CEBPG CTBP1 GLIS2 NFATC1 PRDM10 RUNX3 CREM GATAD2A CBFA2T3 ENSG00000201013 GC02M233380 DGKD ATG16L1 SCARNA5 SAG PIR59405
GH02J233384 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE dbSUPER 0.4 -6.8 -6842 5.3 FOXA2 MLX ARID4B SIN3A DMAP1 ZNF48 YY1 RUNX3 NFKBIZ RXRA DGKD ATG16L1 USP40 SAG SCARNA5 SCARNA6 GC02M233380 ENSG00000201013 PIR59405
GH02J233412 Promoter/Enhancer 2.1 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.3 -41.8 -41818 18.4 PKNOX1 CLOCK FOXA2 ARNT SIN3A FOS KLF13 REST ZNF592 SMARCA4 DGKD USP40 SAG ATG16L1 SCARNA6 SCARNA5 INPP5D LOC105373929 PIR59405 GC02M233380
GH02J233361 Enhancer 0.9 ENCODE dbSUPER 0.4 +18.6 18643 1 TEAD4 TAL1 ZNF384 TCF12 GATA2 NCOR1 VEZF1 CBFA2T2 SMARCE1 MTA2 ATG16L1 SAG SCARNA5 DGKD ENSG00000201013 GC02M233380
GH02J233407 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.3 -29.7 -29704 4.2 HDAC1 TEAD4 TAL1 ZMYM3 RAD21 TCF12 NCOR1 ZBTB48 SCRT2 CBFA2T2 DGKD ENSG00000201013 GC02M233380 PIR59405
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC02M233380 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC02M233380 Gene

Genomic Locations for GC02M233380 Gene
chr2:233,379,844-233,379,955
(GRCh38/hg38)
Size:
112 bases
Orientation:
Minus strand

Genomic View for GC02M233380 Gene

Genes around GC02M233380 on UCSC Golden Path with GeneCards custom track

GC02M233380 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC02M233380 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC02M233380 Gene

Proteins for GC02M233380 Gene

Post-translational modifications for GC02M233380 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC02M233380 Gene

Domains & Families for GC02M233380 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC02M233380 Gene

Function for GC02M233380 Gene

Phenotypes From GWAS Catalog for GC02M233380 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC02M233380 Gene

Localization for GC02M233380 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC02M233380 Gene

Pathways & Interactions for GC02M233380 Gene

SuperPathways for GC02M233380 Gene

No Data Available

Interacting Proteins for GC02M233380 Gene

Gene Ontology (GO) - Biological Process for GC02M233380 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC02M233380 Gene

Drugs & Compounds for GC02M233380 Gene

No Compound Related Data Available

Transcripts for GC02M233380 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC02M233380 Gene

No ASD Table

Relevant External Links for GC02M233380 Gene

GeneLoc Exon Structure for
GC02M233380

No data available for mRNA/cDNA for GC02M233380 Gene

Expression for GC02M233380 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC02M233380 Gene

Orthologs for GC02M233380 Gene

No data available for Orthologs and Evolution for GC02M233380 Gene

Paralogs for GC02M233380 Gene

No data available for Paralogs for GC02M233380 Gene

Variants for GC02M233380 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC02M233380 Gene

Disorders for GC02M233380 Gene

No disorders were found for GC02M233380 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC02M233380 Gene

Publications for GC02M233380 Gene

  1. Conserved features of Y RNAs: a comparison of experimentally derived secondary structures. (PMID: 10606662) Teunissen SW … Pruijn GJ (Nucleic acids research 2000) 1
  2. Ro ribonucleoproteins contribute to the resistance of Deinococcus radiodurans to ultraviolet irradiation. (PMID: 10766734) Chen X … Wolin SL (Genes & development 2000) 1
  3. Caenorhabditis elegans embryos contain only one major species of Ro RNP. (PMID: 7489501) Van Horn DJ … Wolin SL (RNA (New York, N.Y.) 1995) 1

Products for GC02M233380 Gene

Sources for GC02M233380 Gene

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