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Aliases for GC02M208927 Gene

Subcategory (RNA class) for GC02M208927 Gene

rRNA

Quality Score for this RNA gene is

15

Aliases for GC02M208927 Gene

No Aliases found

ORGUL Members for GC02M208927 Gene

No data available for External Ids for GC02M208927 Gene

Summaries for GC02M208927 Gene

GeneCards Summary for GC02M208927 Gene

GC02M208927 is an RNA Gene, and is affiliated with the rRNA class.

fRNAdb sequence ontologies for GC02M208927 Gene

  • rRNA_5S: 5S ribosomal RNA (5S rRNA) is a component of the large ribosomal subunit in both prokaryotes and eukaryotes. In eukaryotes, it is synthesised by RNA polymerase III (the other eukaryotic rRNAs are cleaved from a 45S precursor synthesised by RNA polymerase I). In Xenopus oocytes, it has been shown that fingers 4-7 of the nine-zinc finger transcription factor TFIIIA can bind to the central region of 5S RNA. Thus, in addition to positively regulating 5S rRNA transcription, TFIIIA also stabilises 5S rRNA until it is required for transcription.

Additional gene information for GC02M208927 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC02M208927 Gene

Genomics for GC02M208927 Gene

GeneHancer (GH) Regulatory Elements for GC02M208927 Gene

Promoters and enhancers for GC02M208927 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J208929 Enhancer 0.9 ENCODE 0.4 -8.9 -8928 0.2 HDAC1 PKNOX1 CLOCK ATF1 ZNF207 RCOR1 ATF7 CREM USF2 NCOA1 GC02M208927 RNA5SP117 GC02P209026
GH02J208985 Enhancer 0.6 ENCODE 0.2 -63.0 -63018 0.2 SMARCE1 NFIB TEAD4 DPF2 ZNF217 GATA3 CTBP1 TCF7L2 GC02P209026 GC02M208963 RNA5SP117 GC02M208927
GH02J208906 Enhancer 0.2 ENCODE 0.4 +14.2 14152 0.2 GC02M208927 RNA5SP117 LOC105373856
GH02J208983 Enhancer 0.3 ENCODE 0.2 -63.3 -63347 0 GATA3 GC02P209026 GC02M208963 RNA5SP117 GC02M208927
GH02J208984 Enhancer 0.3 ENCODE 0.2 -64.3 -64328 0.2 GATA3 GC02P209026 GC02M208963 RNA5SP117 GC02M208927
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC02M208927 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC02M208927 Gene

Genomic Locations for GC02M208927 Gene
chr2:208,920,546-208,920,664
(GRCh38/hg38)
Size:
119 bases
Orientation:
Minus strand

Genomic View for GC02M208927 Gene

Genes around GC02M208927 on UCSC Golden Path with GeneCards custom track

GC02M208927 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC02M208927 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC02M208927 Gene

Proteins for GC02M208927 Gene

Post-translational modifications for GC02M208927 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC02M208927 Gene

Domains & Families for GC02M208927 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC02M208927 Gene

Function for GC02M208927 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC02M208927 Gene

Localization for GC02M208927 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC02M208927 Gene

Pathways & Interactions for GC02M208927 Gene

SuperPathways for GC02M208927 Gene

No Data Available

Interacting Proteins for GC02M208927 Gene

Gene Ontology (GO) - Biological Process for GC02M208927 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC02M208927 Gene

Drugs & Compounds for GC02M208927 Gene

No Compound Related Data Available

Transcripts for GC02M208927 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for GC02M208927 Gene

No ASD Table

Relevant External Links for GC02M208927 Gene

GeneLoc Exon Structure for
GC02M208927

No data available for mRNA/cDNA for GC02M208927 Gene

Expression for GC02M208927 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC02M208927 Gene

Orthologs for GC02M208927 Gene

No data available for Orthologs and Evolution for GC02M208927 Gene

Paralogs for GC02M208927 Gene

No data available for Paralogs for GC02M208927 Gene

Variants for GC02M208927 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC02M208927 Gene

Disorders for GC02M208927 Gene

No disorders were found for GC02M208927 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC02M208927 Gene

Publications for GC02M208927 Gene

  1. 5S Ribosomal RNA Database. (PMID: 11752286) Szymanski M … Barciszewski J (Nucleic acids research 2002) 1
  2. Crystal structure of the ribosome at 5.5 A resolution. (PMID: 11283358) Yusupov MM … Noller HF (Science (New York, N.Y.) 2001) 1
  3. The role of the central zinc fingers of transcription factor IIIA in binding to 5 S RNA. (PMID: 10926492) Searles MA … Klug A (Journal of molecular biology 2000) 1

Products for GC02M208927 Gene

Sources for GC02M208927 Gene

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