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Aliases for GC02M164689 Gene

Subcategory (RNA class) for GC02M164689 Gene

snoRNA

Quality Score for this RNA gene is

12

Aliases for GC02M164689 Gene

No Aliases found

ORGUL Members for GC02M164689 Gene

No data available for External Ids for GC02M164689 Gene

Summaries for GC02M164689 Gene

GeneCards Summary for GC02M164689 Gene

GC02M164689 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC02M164689 Gene

  • H_ACA_box_snoRNA: Members of the box H/ACA family contain an ACA triplet, exactly 3 nt upstream from the 3' end and an H-box in a hinge region that links two structurally similar functional domains of the molecule. Both boxes are important for snoRNA biosynthesis and function. A few box H/ACA snoRNAs are involved in rRNA processing; most others are known or predicted to participate in selection of uridine nucleosides in rRNA to be converted to pseudouridines. Site selection is mediated by direct base pairing of the snoRNA with rRNA through one or both targeting domains.

Additional gene information for GC02M164689 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC02M164689 Gene

Genomics for GC02M164689 Gene

GeneHancer (GH) Regulatory Elements for GC02M164689 Gene

Promoters and enhancers for GC02M164689 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I164693 Enhancer 1 ENCODE dbSUPER 0.4 -5.8 -5789 0.2 ELF3 PKNOX1 CLOCK FOXA2 MLX RARA RCOR1 CREM MIXL1 SP5 GC02M164689 SNORA70F GC02M164829 COBLL1
GH02I164709 Enhancer 0.9 ENCODE 0.3 -23.4 -23412 2.8 FOXA2 ZFP64 ZNF48 YY1 SP5 MIER2 REST PPARG NFIL3 MIER3 ENSG00000224331 SNORA70F COBLL1 SLC38A11 GC02M164689 GC02M164829
GH02I164737 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.2 -50.1 -50124 0.6 ELF3 ARID4B DMAP1 ZNF48 ZSCAN9 RAD21 ZNF366 ZNF143 THAP11 MIXL1 GC02M164689 SNORA70F GC02M164829 COBLL1
GH02I164706 Enhancer 0.5 ENCODE 0.4 -18.9 -18914 1.1 JUND NFIA JUN FOSL2 FOS SLC38A11 COBLL1 GC02M164689 SNORA70F GC02M164829
GH02I164722 Enhancer 0.6 Ensembl ENCODE dbSUPER 0.3 -35.1 -35129 1 ENSG00000224331 SNORA70F COBLL1 GC02M164689 GC02M164829
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC02M164689 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC02M164689 Gene

Genomic Locations for GC02M164689 Gene
chr2:164,687,642-164,687,777
(GRCh38/hg38)
Size:
136 bases
Orientation:
Minus strand

Genomic View for GC02M164689 Gene

Genes around GC02M164689 on UCSC Golden Path with GeneCards custom track

GC02M164689 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC02M164689 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC02M164689 Gene

Proteins for GC02M164689 Gene

Post-translational modifications for GC02M164689 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC02M164689 Gene

Domains & Families for GC02M164689 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC02M164689 Gene

Function for GC02M164689 Gene

Phenotypes From GWAS Catalog for GC02M164689 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for GC02M164689 Gene

Localization for GC02M164689 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC02M164689 Gene

Pathways & Interactions for GC02M164689 Gene

SuperPathways for GC02M164689 Gene

No Data Available

Interacting Proteins for GC02M164689 Gene

Gene Ontology (GO) - Biological Process for GC02M164689 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC02M164689 Gene

Drugs & Compounds for GC02M164689 Gene

No Compound Related Data Available

Transcripts for GC02M164689 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC02M164689 Gene

No ASD Table

Relevant External Links for GC02M164689 Gene

GeneLoc Exon Structure for
GC02M164689

No data available for mRNA/cDNA for GC02M164689 Gene

Expression for GC02M164689 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC02M164689 Gene

Orthologs for GC02M164689 Gene

No data available for Orthologs and Evolution for GC02M164689 Gene

Paralogs for GC02M164689 Gene

No data available for Paralogs for GC02M164689 Gene

Variants for GC02M164689 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC02M164689 Gene

Disorders for GC02M164689 Gene

No disorders were found for GC02M164689 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC02M164689 Gene

Publications for GC02M164689 Gene

  1. Small nucleolar RNAs: an abundant group of noncoding RNAs with diverse cellular functions. (PMID: 12007400) Kiss T (Cell 2002) 1
  2. Pseudouridine in RNA: what, where, how, and why. (PMID: 10902565) Charette M … Gray MW (IUBMB life 2000) 1

Products for GC02M164689 Gene

Sources for GC02M164689 Gene

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