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Aliases for GC02M159029 Gene

Subcategory (RNA class) for GC02M159029 Gene

snRNA

Quality Score for this RNA gene is

15

Aliases for GC02M159029 Gene

No Aliases found

ORGUL Members for GC02M159029 Gene

No data available for External Ids for GC02M159029 Gene

Summaries for GC02M159029 Gene

GeneCards Summary for GC02M159029 Gene

GC02M159029 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC02M159029 Gene

  • U6_snRNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA.

Additional gene information for GC02M159029 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC02M159029 Gene

Genomics for GC02M159029 Gene

GeneHancer (GH) Regulatory Elements for GC02M159029 Gene

Promoters and enhancers for GC02M159029 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J159025 Enhancer 0.2 dbSUPER 650.7 +0.8 769 1.1 GC02M159029 RNU6-580P OR7E89P TANC1 BTF3L4P2 GC02P158993
GH02J159029 Enhancer 1.6 VISTA Ensembl ENCODE dbSUPER 0.7 -3.8 -3846 3 HDAC1 NFIB RCOR1 FOS RXRA NR2F2 SP1 NFIC SMARCA4 IKZF1 TANC1 OR7E89P GC02M159029 RNU6-580P GSTM3P2 GC02P158993
GH02J159036 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 -9.0 -9017 0.3 CTCF ATF1 RB1 JUN RAD21 TEAD3 ARID2 SMC3 NR2F6 ATF7 GC02M159029 RNU6-580P GSTM3P2 GC02P158993 TANC1
GH02J159045 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 -19.6 -19612 2.1 PKNOX1 JUN BMI1 ZNF316 GATA3 SCRT2 PRDM10 MAFK SMARCE1 RNF2 TANC1 OR7E28P OR7E89P GSTM3P2 GC02M159029 RNU6-580P GC02P158993
GH02J159009 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 +16.7 16672 1.2 MNT ZIC2 SP1 ZNF664 ZFHX2 GATA3 GLIS1 ZSCAN5C PRDM1 WT1 TANC1 BTF3L4P2 GC02P158993 RNU6-580P GC02M159029
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC02M159029 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC02M159029 Gene

Genomic Locations for GC02M159029 Gene
chr2:159,027,035-159,027,142
(GRCh38/hg38)
Size:
108 bases
Orientation:
Minus strand

Genomic View for GC02M159029 Gene

Genes around GC02M159029 on UCSC Golden Path with GeneCards custom track

GC02M159029 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC02M159029 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC02M159029 Gene

Proteins for GC02M159029 Gene

Post-translational modifications for GC02M159029 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC02M159029 Gene

Domains & Families for GC02M159029 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC02M159029 Gene

Function for GC02M159029 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC02M159029 Gene

Localization for GC02M159029 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC02M159029 Gene

Pathways & Interactions for GC02M159029 Gene

SuperPathways for GC02M159029 Gene

No Data Available

Interacting Proteins for GC02M159029 Gene

Gene Ontology (GO) - Biological Process for GC02M159029 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC02M159029 Gene

Drugs & Compounds for GC02M159029 Gene

No Compound Related Data Available

Transcripts for GC02M159029 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for GC02M159029 Gene

No ASD Table

Relevant External Links for GC02M159029 Gene

GeneLoc Exon Structure for
GC02M159029

No data available for mRNA/cDNA for GC02M159029 Gene

Expression for GC02M159029 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC02M159029 Gene

Orthologs for GC02M159029 Gene

No data available for Orthologs and Evolution for GC02M159029 Gene

Paralogs for GC02M159029 Gene

No data available for Paralogs for GC02M159029 Gene

Variants for GC02M159029 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC02M159029 Gene

Disorders for GC02M159029 Gene

No disorders were found for GC02M159029 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC02M159029 Gene

Publications for GC02M159029 Gene

  1. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  2. Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions. (PMID: 1960724) Orum H … Engberg J (Journal of molecular biology 1991) 1
  3. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

Products for GC02M159029 Gene

Sources for GC02M159029 Gene

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