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Aliases for GC02M148261 Gene

Subcategory (RNA class) for GC02M148261 Gene

snoRNA

Quality Score for this RNA gene is

12

Aliases for GC02M148261 Gene

No Aliases found

ORGUL Members for GC02M148261 Gene

No data available for External Ids for GC02M148261 Gene

Summaries for GC02M148261 Gene

GeneCards Summary for GC02M148261 Gene

GC02M148261 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC02M148261 Gene

  • H_ACA_box_snoRNA: Members of the box H/ACA family contain an ACA triplet, exactly 3 nt upstream from the 3' end and an H-box in a hinge region that links two structurally similar functional domains of the molecule. Both boxes are important for snoRNA biosynthesis and function. A few box H/ACA snoRNAs are involved in rRNA processing; most others are known or predicted to participate in selection of uridine nucleosides in rRNA to be converted to pseudouridines. Site selection is mediated by direct base pairing of the snoRNA with rRNA through one or both targeting domains.

Additional gene information for GC02M148261 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC02M148261 Gene

Genomics for GC02M148261 Gene

GeneHancer (GH) Regulatory Elements for GC02M148261 Gene

Promoters and enhancers for GC02M148261 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I148259 Enhancer 0.8 FANTOM5 550.8 +0.9 882 0.3 ZNF529 BACH1 CHAMP1 ZNF316 RBAK ZNF26 ZNF169 ZNF143 NFE2 ATF7 ENSG00000212181 GC02M148261 ACVR2A ORC4 MBD5 EPC2 GC02M148193
GH02I148244 Enhancer 0.6 ENCODE 0.4 +15.7 15658 0.9 SOX5 SOX13 GATAD2A FOXA2 FOXA3 ZNF384 FOXA1 FOS FOSL2 MAFK ENSG00000212181 GC02M148261 GC02M148193 MBD5
GH02I148273 Enhancer 0.5 ENCODE 0.4 -12.8 -12781 1 ZNF316 HLF MAFK HOMEZ PRDM1 ENSG00000212181 GC02M148261 LOC100130682 MBD5
GH02I148201 Enhancer 0.8 ENCODE 0.2 +59.2 59161 0.2 DRAP1 ELF3 SOX13 CTCF FOXA2 ARID4B CEBPG DMAP1 ZNF644 ZNF48 GC02M148193 ENSG00000212181 GC02M148261 MBD5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC02M148261 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC02M148261 Gene

Genomic Locations for GC02M148261 Gene
chr2:148,260,573-148,260,708
(GRCh38/hg38)
Size:
136 bases
Orientation:
Minus strand

Genomic View for GC02M148261 Gene

Genes around GC02M148261 on UCSC Golden Path with GeneCards custom track

GC02M148261 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC02M148261 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC02M148261 Gene

Proteins for GC02M148261 Gene

Post-translational modifications for GC02M148261 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC02M148261 Gene

Domains & Families for GC02M148261 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC02M148261 Gene

Function for GC02M148261 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for GC02M148261 Gene

Localization for GC02M148261 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC02M148261 Gene

Pathways & Interactions for GC02M148261 Gene

SuperPathways for GC02M148261 Gene

No Data Available

Interacting Proteins for GC02M148261 Gene

Gene Ontology (GO) - Biological Process for GC02M148261 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC02M148261 Gene

Drugs & Compounds for GC02M148261 Gene

No Compound Related Data Available

Transcripts for GC02M148261 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC02M148261 Gene

No ASD Table

Relevant External Links for GC02M148261 Gene

GeneLoc Exon Structure for
GC02M148261

No data available for mRNA/cDNA for GC02M148261 Gene

Expression for GC02M148261 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC02M148261 Gene

Orthologs for GC02M148261 Gene

No data available for Orthologs and Evolution for GC02M148261 Gene

Paralogs for GC02M148261 Gene

No data available for Paralogs for GC02M148261 Gene

Variants for GC02M148261 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC02M148261 Gene

Disorders for GC02M148261 Gene

No disorders were found for GC02M148261 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC02M148261 Gene

Publications for GC02M148261 Gene

  1. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 1
  2. Mapping to nucleotide resolution of pseudouridine residues in large subunit ribosomal RNAs from representative eukaryotes, prokaryotes, archaebacteria, mitochondria and chloroplasts. (PMID: 9047361) Ofengand J … Bakin A (Journal of molecular biology 1997) 1

Products for GC02M148261 Gene

Sources for GC02M148261 Gene

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