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Aliases for GC02M130954 Gene

Subcategory (RNA class) for GC02M130954 Gene

scaRNA

Quality Score for this RNA gene is

12

Aliases for GC02M130954 Gene

No Aliases found

ORGUL Members for GC02M130954 Gene

No data available for External Ids for GC02M130954 Gene

Summaries for GC02M130954 Gene

GeneCards Summary for GC02M130954 Gene

GC02M130954 is an RNA Gene, and is affiliated with the scaRNA class.

fRNAdb sequence ontologies for GC02M130954 Gene

  • snoRNA: A snoRNA (small nucleolar RNA) is any one of a class of small RNAs that are associated with the eukaryotic nucleus as components of small nucleolar ribonucleoproteins. They participate in the processing or modifications of many RNAs, mostly ribosomal RNAs (rRNAs) though snoRNAs are also known to target other classes of RNA, including spliceosomal RNAs, tRNAs, and mRNAs via a stretch of sequence that is complementary to a sequence in the targeted RNA.

Additional gene information for GC02M130954 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC02M130954 Gene

Genomics for GC02M130954 Gene

GeneHancer (GH) Regulatory Elements for GC02M130954 Gene

Promoters and enhancers for GC02M130954 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I130966 Enhancer 0.5 ENCODE 0.3 -36.9 -36851 1.2 SOX13 CREB1 BCL6 MAFK EZH2 ARHGEF4 GC02P130994 GC02M130954 ENSG00000281516 GC02P130572
GH02I130985 Enhancer 0.6 Ensembl 0.2 -56.1 -56117 1.2 SUZ12 TRIM22 YBX1 MNT TBX3 LCORL FOXK2 IKZF1 NBN CREB1 GC02P130994 GC02M130954 ENSG00000281516 ARHGEF4 GC02P130572
GH02I130987 Enhancer 0.2 FANTOM5 0.2 -57.7 -57689 0.2 GC02P130994 ENSG00000281516 GC02M130954 ARHGEF4 GC02P130572
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC02M130954 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC02M130954 Gene

Genomic Locations for GC02M130954 Gene
chr2:130,929,761-130,929,884
(GRCh38/hg38)
Size:
124 bases
Orientation:
Minus strand

Genomic View for GC02M130954 Gene

Genes around GC02M130954 on UCSC Golden Path with GeneCards custom track

GC02M130954 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC02M130954 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC02M130954 Gene

Proteins for GC02M130954 Gene

Post-translational modifications for GC02M130954 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC02M130954 Gene

Domains & Families for GC02M130954 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC02M130954 Gene

Function for GC02M130954 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for GC02M130954 Gene

Localization for GC02M130954 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC02M130954 Gene

Pathways & Interactions for GC02M130954 Gene

SuperPathways for GC02M130954 Gene

No Data Available

Interacting Proteins for GC02M130954 Gene

Gene Ontology (GO) - Biological Process for GC02M130954 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC02M130954 Gene

Drugs & Compounds for GC02M130954 Gene

No Compound Related Data Available

Transcripts for GC02M130954 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC02M130954 Gene

No ASD Table

Relevant External Links for GC02M130954 Gene

GeneLoc Exon Structure for
GC02M130954

No data available for mRNA/cDNA for GC02M130954 Gene

Expression for GC02M130954 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC02M130954 Gene

Orthologs for GC02M130954 Gene

No data available for Orthologs and Evolution for GC02M130954 Gene

Paralogs for GC02M130954 Gene

No data available for Paralogs for GC02M130954 Gene

Variants for GC02M130954 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC02M130954 Gene

Disorders for GC02M130954 Gene

No disorders were found for GC02M130954 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC02M130954 Gene

Publications for GC02M130954 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 1
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 1
  3. Cajal body-specific small nuclear RNAs: a novel class of 2'-O-methylation and pseudouridylation guide RNAs. (PMID: 12032087) Darzacq X … Kiss T (The EMBO journal 2002) 1

Products for GC02M130954 Gene

Sources for GC02M130954 Gene

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