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Aliases for GC01P057205 Gene

Subcategory (RNA class) for GC01P057205 Gene

snoRNA

Quality Score for this RNA gene is

15

Aliases for GC01P057205 Gene

No Aliases found

ORGUL Members for GC01P057205 Gene

No data available for External Ids for GC01P057205 Gene

Summaries for GC01P057205 Gene

GeneCards Summary for GC01P057205 Gene

GC01P057205 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC01P057205 Gene - the ORGUL cluster for this gene includes several descriptions:

  • snoRNA: A snoRNA (small nucleolar RNA) is any one of a class of small RNAs that are associated with the eukaryotic nucleus as components of small nucleolar ribonucleoproteins. They participate in the processing or modifications of many RNAs, mostly ribosomal RNAs (rRNAs) though snoRNAs are also known to target other classes of RNA, including spliceosomal RNAs, tRNAs, and mRNAs via a stretch of sequence that is complementary to a sequence in the targeted RNA.

  • H_ACA_box_snoRNA: Members of the box H/ACA family contain an ACA triplet, exactly 3 nt upstream from the 3' end and an H-box in a hinge region that links two structurally similar functional domains of the molecule. Both boxes are important for snoRNA biosynthesis and function. A few box H/ACA snoRNAs are involved in rRNA processing; most others are known or predicted to participate in selection of uridine nucleosides in rRNA to be converted to pseudouridines. Site selection is mediated by direct base pairing of the snoRNA with rRNA through one or both targeting domains.

View fRNAdb secondary structures for GC01P057205

Additional gene information for GC01P057205 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC01P057205 Gene

Genomics for GC01P057205 Gene

GeneHancer (GH) Regulatory Elements for GC01P057205 Gene

Promoters and enhancers for GC01P057205 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J057206 Enhancer 0.7 Ensembl ENCODE 600.7 +1.2 1183 2.1 SP1 IKZF1 POLR2A NANOG POU5F1 CBFA2T3 GC01M057203 GC01M057205 GC01P057205
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC01P057205 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC01P057205 Gene

Genomic Locations for GC01P057205 Gene
chr1:57,204,465-57,204,671
(GRCh38/hg38)
Size:
207 bases
Orientation:
Plus strand

Genomic View for GC01P057205 Gene

Genes around GC01P057205 on UCSC Golden Path with GeneCards custom track

GC01P057205 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC01P057205 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC01P057205 Gene

ORGUL Member Location for GC01P057205 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC01P057205 Gene

Proteins for GC01P057205 Gene

Post-translational modifications for GC01P057205 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC01P057205 Gene

Domains & Families for GC01P057205 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC01P057205 Gene

Function for GC01P057205 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC01P057205 Gene

Localization for GC01P057205 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC01P057205 Gene

Pathways & Interactions for GC01P057205 Gene

PathCards logo

SuperPathways for GC01P057205 Gene

No Data Available

Interacting Proteins for GC01P057205 Gene

Gene Ontology (GO) - Biological Process for GC01P057205 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC01P057205 Gene

Drugs & Compounds for GC01P057205 Gene

No Compound Related Data Available

Transcripts for GC01P057205 Gene

fRNAdb Secondary structures for GC01P057205 Gene

  • FR288342
  • FR318011
  • FR274261

Alternative Splicing Database (ASD) splice patterns (SP) for GC01P057205 Gene

No ASD Table

Relevant External Links for GC01P057205 Gene

GeneLoc Exon Structure for
GC01P057205

No data available for mRNA/cDNA for GC01P057205 Gene

Expression for GC01P057205 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC01P057205 Gene

Orthologs for GC01P057205 Gene

No data available for Orthologs and Evolution for GC01P057205 Gene

Paralogs for GC01P057205 Gene

No data available for Paralogs for GC01P057205 Gene

Variants for GC01P057205 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC01P057205 Gene

Disorders for GC01P057205 Gene

No disorders were found for GC01P057205 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC01P057205 Gene

Publications for GC01P057205 Gene

  1. NONCODE: an integrated knowledge database of non-coding RNAs. (PMID: 15608158) Liu C … Chen R (Nucleic acids research 2005) 1
  2. Comparative structure analysis of vertebrate U17 small nucleolar RNA (snoRNA). (PMID: 11821910) Cervelli M … Mariottini P (Journal of molecular evolution 2002) 1
  3. Archaeal homologs of eukaryotic methylation guide small nucleolar RNAs: lessons from the Pyrococcus genomes. (PMID: 10736225) Gaspin C … Bachellerie JP (Journal of molecular biology 2000) 1
  4. The RNA world of the nucleolus: two major families of small RNAs defined by different box elements with related functions. (PMID: 8797828) Balakin AG … Fournier MJ (Cell 1996) 1
  5. 5'ETS rRNA processing facilitated by four small RNAs: U14, E3, U17, and U3. (PMID: 8903340) Enright CA … Sollner-Webb B (RNA (New York, N.Y.) 1996) 1

No data available for External Links for GC01P057205 Gene

Products for GC01P057205 Gene

Sources for GC01P057205 Gene

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