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Aliases for GC01P054925 Gene

Subcategory (RNA class) for GC01P054925 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for GC01P054925 Gene

No Aliases found

ORGUL Members for GC01P054925 Gene

No data available for External Ids for GC01P054925 Gene

Summaries for GC01P054925 Gene

GeneCards Summary for GC01P054925 Gene

GC01P054925 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for GC01P054925 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

View fRNAdb secondary structures for GC01P054925

Additional gene information for GC01P054925 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC01P054925 Gene

Genomics for GC01P054925 Gene

GeneHancer (GH) Regulatory Elements for GC01P054925 Gene

Promoters and enhancers for GC01P054925 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J054923 Enhancer 0.9 Ensembl ENCODE 600.7 -1.9 -1912 2.2 SP1 RXRA CEBPA CTBP1 FOXA2 JUND ATF3 YY1 ZBTB33 ZNF217 GC01P054924 GC01P054925 DHCR24 DHCR24-DT ENSG00000242396 TMEM61 TTC22 ENSG00000237453 TTC4 GC01P054911
GH01J054926 Enhancer 1 Ensembl ENCODE 0.7 +3.1 3085 2.6 CBFA2T2 MAFK TRIM24 SMARCA4 CEBPA RXRB ZNF24 HDAC1 EP300 SOX6 DHCR24 ENSG00000242396 DHCR24-DT TMEM61 TTC22 ENSG00000237453 GC01P054925 GC01M054936
GH01J054934 Enhancer 1.1 FANTOM5 Ensembl ENCODE 0.4 +9.4 9424 2.9 ZNF384 POLR2A GATAD2A SOX13 FOXA2 MLLT1 TRIM28 TEAD1 DPF2 FOXA1 GC01M054936 DHCR24 TMEM61 ENSG00000242396 DHCR24-DT GC01P054925
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC01P054925 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC01P054925 Gene

Genomic Locations for GC01P054925 Gene
chr1:54,924,813-54,924,845
(GRCh38/hg38)
Size:
33 bases
Orientation:
Plus strand

Genomic View for GC01P054925 Gene

Genes around GC01P054925 on UCSC Golden Path with GeneCards custom track

GC01P054925 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC01P054925 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC01P054925 Gene

ORGUL Member Location for GC01P054925 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC01P054925 Gene

Proteins for GC01P054925 Gene

Post-translational modifications for GC01P054925 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC01P054925 Gene

Domains & Families for GC01P054925 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC01P054925 Gene

Function for GC01P054925 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC01P054925 Gene

Localization for GC01P054925 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC01P054925 Gene

Pathways & Interactions for GC01P054925 Gene

PathCards logo

SuperPathways for GC01P054925 Gene

No Data Available

Interacting Proteins for GC01P054925 Gene

Gene Ontology (GO) - Biological Process for GC01P054925 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC01P054925 Gene

Drugs & Compounds for GC01P054925 Gene

No Compound Related Data Available

Transcripts for GC01P054925 Gene

fRNAdb Secondary structures for GC01P054925 Gene

  • FR289979
  • FR301478

Alternative Splicing Database (ASD) splice patterns (SP) for GC01P054925 Gene

No ASD Table

Relevant External Links for GC01P054925 Gene

GeneLoc Exon Structure for
GC01P054925

No data available for mRNA/cDNA for GC01P054925 Gene

Expression for GC01P054925 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC01P054925 Gene

Orthologs for GC01P054925 Gene

No data available for Orthologs and Evolution for GC01P054925 Gene

Paralogs for GC01P054925 Gene

No data available for Paralogs for GC01P054925 Gene

Variants for GC01P054925 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC01P054925 Gene

Disorders for GC01P054925 Gene

No disorders were found for GC01P054925 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC01P054925 Gene

Publications for GC01P054925 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

No data available for External Links for GC01P054925 Gene

Products for GC01P054925 Gene

Sources for GC01P054925 Gene

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