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Aliases for GC01P054356 Gene

Subcategory (RNA class) for GC01P054356 Gene

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Quality Score for this RNA gene is

13.4

Aliases for GC01P054356 Gene

No Aliases found

ORGUL Members for GC01P054356 Gene

No data available for External Ids for GC01P054356 Gene

Summaries for GC01P054356 Gene

GeneCards Summary for GC01P054356 Gene

GC01P054356 is an RNA Gene, and is affiliated with the undefined RNA class.

fRNAdb sequence ontologies for GC01P054356 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for GC01P054356

Additional gene information for GC01P054356 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC01P054356 Gene

Genomics for GC01P054356 Gene

GeneHancer (GH) Regulatory Elements for GC01P054356 Gene

Promoters and enhancers for GC01P054356 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J054353 Promoter/Enhancer 1.6 Ensembl ENCODE dbSUPER 600.7 -0.6 -566 3.9 ZNF652 ELF3 CBFA2T2 CSDE1 RELA SP1 SP5 MLLT1 SMARCA4 MTA1 GC01P054356 SSBP3-AS1 ENSG00000225632 ENSG00000279049 SSBP3 CYB5RL
GH01J054346 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.4 -8.3 -8255 2.5 ELF3 ZNF121 SP1 HNF1A PPARG SP5 ZNF644 KAT8 RXRA CEBPA SSBP3-AS1 GC01P054356 ENSG00000225632 SSBP3
GH01J054359 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 +6.8 6828 7 ZNF121 SP1 RAD21 RXRA IKZF1 RFX1 ZNF600 REST PKNOX1 FOXA2 SSBP3 TCEANC2 TMEM59 MROH7 ENSG00000237453 TTC22 GC01P054356 GC01M054384
GH01J054329 Promoter/Enhancer 1.5 Ensembl ENCODE dbSUPER 0.3 -22.3 -22332 9.9 ZNF121 SP1 EGR1 POLR2A PKNOX1 ZIC2 ZNF629 SCRT2 SOX6 ZBTB20 SSBP3 SSBP3-AS1 ENSG00000225632 TCEANC2 TMEM59 GC01P054356
GH01J054322 Promoter/Enhancer 1.6 Ensembl ENCODE dbSUPER 0.3 -30.7 -30650 6.7 ZNF148 CEBPG SP7 SP1 PRDM1 MZF1 GLIS2 PKNOX1 IKZF1 ZNF600 ENSG00000225632 SSBP3 SSBP3-AS1 TMEM59 TCEANC2 TTC22 ENSG00000237453 GC01P054356
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC01P054356 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC01P054356 Gene

Genomic Locations for GC01P054356 Gene
chr1:54,356,473-54,356,665
(GRCh38/hg38)
Size:
193 bases
Orientation:
Plus strand

Genomic View for GC01P054356 Gene

Genes around GC01P054356 on UCSC Golden Path with GeneCards custom track

GC01P054356 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC01P054356 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC01P054356 Gene

ORGUL Member Location for GC01P054356 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC01P054356 Gene

Proteins for GC01P054356 Gene

Post-translational modifications for GC01P054356 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC01P054356 Gene

Domains & Families for GC01P054356 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC01P054356 Gene

Function for GC01P054356 Gene

Phenotypes From GWAS Catalog for GC01P054356 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC01P054356 Gene

Localization for GC01P054356 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC01P054356 Gene

Pathways & Interactions for GC01P054356 Gene

PathCards logo

SuperPathways for GC01P054356 Gene

No Data Available

Interacting Proteins for GC01P054356 Gene

Gene Ontology (GO) - Biological Process for GC01P054356 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC01P054356 Gene

Drugs & Compounds for GC01P054356 Gene

No Compound Related Data Available

Transcripts for GC01P054356 Gene

fRNAdb Secondary structures for GC01P054356 Gene

  • FR056839
  • FR105597

Alternative Splicing Database (ASD) splice patterns (SP) for GC01P054356 Gene

No ASD Table

Relevant External Links for GC01P054356 Gene

GeneLoc Exon Structure for
GC01P054356

No data available for mRNA/cDNA for GC01P054356 Gene

Expression for GC01P054356 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC01P054356 Gene

Orthologs for GC01P054356 Gene

No data available for Orthologs and Evolution for GC01P054356 Gene

Paralogs for GC01P054356 Gene

No data available for Paralogs for GC01P054356 Gene

Variants for GC01P054356 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC01P054356 Gene

Disorders for GC01P054356 Gene

No disorders were found for GC01P054356 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC01P054356 Gene

Publications for GC01P054356 Gene

  1. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen JS … Haussler D (PLoS computational biology 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  3. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S … Stadler PF (Nature biotechnology 2005) 1

No data available for External Links for GC01P054356 Gene

Products for GC01P054356 Gene

Sources for GC01P054356 Gene

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