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Aliases for GC01P054263 Gene

Subcategory (RNA class) for GC01P054263 Gene

lncRNA

Quality Score for this RNA gene is

13

Aliases for GC01P054263 Gene

No Aliases found

ORGUL Members for GC01P054263 Gene

No data available for External Ids for GC01P054263 Gene

Summaries for GC01P054263 Gene

GeneCards Summary for GC01P054263 Gene

GC01P054263 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for GC01P054263 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GC01P054263 Gene

Genomics for GC01P054263 Gene

GeneHancer (GH) Regulatory Elements for GC01P054263 Gene

Promoters and enhancers for GC01P054263 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J054262 Enhancer 0.7 Ensembl dbSUPER 600.7 +0.2 164 1.8 RXRA ZIC2 POLR2A NR2F2 GC01P054263 SSBP3-AS1 SSBP3 ENSG00000225632 TCEANC2 TMEM59 CDCP2
GH01J054271 Enhancer 1.4 FANTOM5 ENCODE dbSUPER 0.4 +13.2 13204 10.6 CBFA2T2 ZNF148 ZNF121 GTF2F1 ZSCAN21 CTCF TRIM24 SP7 SP1 PRDM1 SSBP3-AS1 SSBP3 TMEM59 CYB5RL NDC1 ENSG00000256407 TCEANC2 ENSG00000237453 TTC22 ENSG00000225632
GH01J054252 Promoter/Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 -9.8 -9765 2.3 SP7 ZIC2 ZBTB17 FOS ZNF423 JUND GLIS1 SSBP3 GC01P054263 SSBP3-AS1
GH01J054284 Promoter/Enhancer 1.6 Ensembl ENCODE dbSUPER 0.3 +25.2 25205 7.5 ZFX CC2D1A YY1 SP7 SP1 PPARG MZF1 ZNF680 SMARCA4 GLIS2 SSBP3-AS1 TCEANC2 TMEM59 ENSG00000225632 GC01P054263 GC01P054356 SSBP3
GH01J054248 Enhancer 1.1 FANTOM5 ENCODE dbSUPER 0.4 -13.5 -13509 2.9 TFE3 ZNF600 SCRT2 RCOR1 JUND ZEB1 ZBTB17 SCRT1 POLR2A WT1 SSBP3 MRPL37 GC01P054263 SSBP3-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC01P054263 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC01P054263 Gene

Genomic Locations for GC01P054263 Gene
chr1:54,263,337-54,290,029
(GRCh38/hg38)
Size:
26,693 bases
Orientation:
Plus strand

Genomic View for GC01P054263 Gene

Genes around GC01P054263 on UCSC Golden Path with GeneCards custom track

GC01P054263 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC01P054263 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC01P054263 Gene

Proteins for GC01P054263 Gene

Post-translational modifications for GC01P054263 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC01P054263 Gene

Domains & Families for GC01P054263 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC01P054263 Gene

Function for GC01P054263 Gene

Phenotypes From GWAS Catalog for GC01P054263 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC01P054263 Gene

Localization for GC01P054263 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC01P054263 Gene

Pathways & Interactions for GC01P054263 Gene

PathCards logo

SuperPathways for GC01P054263 Gene

No Data Available

Interacting Proteins for GC01P054263 Gene

Gene Ontology (GO) - Biological Process for GC01P054263 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC01P054263 Gene

Drugs & Compounds for GC01P054263 Gene

No Compound Related Data Available

Transcripts for GC01P054263 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC01P054263 Gene

No ASD Table

Relevant External Links for GC01P054263 Gene

GeneLoc Exon Structure for
GC01P054263

No data available for mRNA/cDNA for GC01P054263 Gene

Expression for GC01P054263 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC01P054263 Gene

Orthologs for GC01P054263 Gene

No data available for Orthologs and Evolution for GC01P054263 Gene

Paralogs for GC01P054263 Gene

No data available for Paralogs for GC01P054263 Gene

Variants for GC01P054263 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC01P054263 Gene

Disorders for GC01P054263 Gene

No disorders were found for GC01P054263 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC01P054263 Gene

Publications for GC01P054263 Gene

No publications were found for GC01P054263 Gene.

No data available for External Links for GC01P054263 Gene

Products for GC01P054263 Gene

Sources for GC01P054263 Gene

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