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Aliases for GC01P042164 Gene

Subcategory (RNA class) for GC01P042164 Gene

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Quality Score for this RNA gene is

13.4

Aliases for GC01P042164 Gene

No Aliases found

ORGUL Members for GC01P042164 Gene

No data available for External Ids for GC01P042164 Gene

Summaries for GC01P042164 Gene

GeneCards Summary for GC01P042164 Gene

GC01P042164 is an RNA Gene, and is affiliated with the undefined RNA class.

fRNAdb sequence ontologies for GC01P042164 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for GC01P042164

Additional gene information for GC01P042164 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC01P042164 Gene

Genomics for GC01P042164 Gene

GeneHancer (GH) Regulatory Elements for GC01P042164 Gene

Promoters and enhancers for GC01P042164 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J042164 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 600.7 +0.8 797 2.5 ZNF473 ELF3 ZNF121 NFIB ZSCAN21 ZBTB7A SP7 SP5 ZNF548 KLF14 GC01P042164 GUCA2A PPIH FOXJ3 P3H1 CCDC30 ZNF691 ENSG00000227527 GC01M042279 PIR49391
GH01J042177 Enhancer 1.2 Ensembl ENCODE 0.4 +13.9 13936 3.4 ZNF473 CTCF ZSCAN21 ZBTB7A SP7 PRDM1 MZF1 RAD21 POLR2A ZNF488 FOXJ3 ZNF691 P3H1 PPIH GC01P042164 GC01M042279 PIR49391
GH01J042170 Enhancer 1.1 Ensembl ENCODE 0.4 +8.7 8689 5.8 ELF3 CTCF KLF14 RAD21 CEBPG GLIS2 PKNOX1 RXRA SOX13 ZIC2 FOXJ3 C1orf50 SVBP RIMKLA GC01P042164 PIR49391 GC01M042279
GH01J042214 Enhancer 0.9 ENCODE 0.3 +50.0 49980 0.2 ELF3 CEBPG TFE3 SP1 PPARG SP5 ZNF644 KAT8 RXRA SOX13 GC01P042164 GC01M042279 PIR49391 FOXJ3
GH01J042222 Enhancer 1 Ensembl ENCODE 0.2 +57.4 57436 1.6 TRIM24 SP7 SMARCA4 MTA1 DPF2 IKZF1 ZNF512 PKNOX1 ZNF24 HDAC1 GUCA2B PPCS ZMYND12 YBX1 PIR49391 GC01M042279 GC01P042164 FOXJ3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC01P042164 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC01P042164 Gene

Genomic Locations for GC01P042164 Gene
chr1:42,164,765-42,164,826
(GRCh38/hg38)
Size:
62 bases
Orientation:
Plus strand

Genomic View for GC01P042164 Gene

Genes around GC01P042164 on UCSC Golden Path with GeneCards custom track

GC01P042164 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC01P042164 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC01P042164 Gene

ORGUL Member Location for GC01P042164 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC01P042164 Gene

Proteins for GC01P042164 Gene

Post-translational modifications for GC01P042164 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC01P042164 Gene

Domains & Families for GC01P042164 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC01P042164 Gene

Function for GC01P042164 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC01P042164 Gene

Localization for GC01P042164 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC01P042164 Gene

Pathways & Interactions for GC01P042164 Gene

PathCards logo

SuperPathways for GC01P042164 Gene

No Data Available

Interacting Proteins for GC01P042164 Gene

Gene Ontology (GO) - Biological Process for GC01P042164 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC01P042164 Gene

Drugs & Compounds for GC01P042164 Gene

No Compound Related Data Available

Transcripts for GC01P042164 Gene

fRNAdb Secondary structures for GC01P042164 Gene

  • FR391815

Alternative Splicing Database (ASD) splice patterns (SP) for GC01P042164 Gene

No ASD Table

Relevant External Links for GC01P042164 Gene

GeneLoc Exon Structure for
GC01P042164

No data available for mRNA/cDNA for GC01P042164 Gene

Expression for GC01P042164 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC01P042164 Gene

Orthologs for GC01P042164 Gene

No data available for Orthologs and Evolution for GC01P042164 Gene

Paralogs for GC01P042164 Gene

No data available for Paralogs for GC01P042164 Gene

Variants for GC01P042164 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC01P042164 Gene

Disorders for GC01P042164 Gene

No disorders were found for GC01P042164 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC01P042164 Gene

Publications for GC01P042164 Gene

  1. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen JS … Haussler D (PLoS computational biology 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  3. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S … Stadler PF (Nature biotechnology 2005) 1

No data available for External Links for GC01P042164 Gene

Products for GC01P042164 Gene

Sources for GC01P042164 Gene

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