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Aliases for GC01P040763 Gene

Subcategory (RNA class) for GC01P040763 Gene

miRNA

Quality Score for this RNA gene is

13.2

Aliases for GC01P040763 Gene

No Aliases found

ORGUL Members for GC01P040763 Gene

No data available for External Ids for GC01P040763 Gene

Summaries for GC01P040763 Gene

GeneCards Summary for GC01P040763 Gene

GC01P040763 is an RNA Gene, and is affiliated with the miRNA class.

fRNAdb sequence ontologies for GC01P040763 Gene - the ORGUL cluster for this gene includes several descriptions:

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

  • pre_miRNA: The 60-70 nucleotide region remain after Drosha processing of the primary transcript, that folds back upon itself to form a hairpin sructure.

View fRNAdb secondary structures for GC01P040763

Additional gene information for GC01P040763 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC01P040763 Gene

Genomics for GC01P040763 Gene

GeneHancer (GH) Regulatory Elements for GC01P040763 Gene

Promoters and enhancers for GC01P040763 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J040763 Enhancer 0.9 Ensembl ENCODE 600.7 +0.1 55 3 ZNF687 CREM MLLT1 IKZF1 IKZF2 TRIM22 CBFB SCRT2 DPF2 RUNX3 GC01P040763 ENSG00000237899 NFYC-AS1 KCNQ4 ENSG00000238287 NFYC
GH01J040782 Promoter/Enhancer 1.1 Ensembl ENCODE 0.4 +18.8 18820 0.3 IKZF1 ZNF600 KLF9 SP2 ZNF189 SIN3A CTCF ZNF398 RAD21 ZNF48 KCNQ4 GC01P040763 GC01M040775
GH01J040773 Enhancer 0.9 ENCODE 0.4 +10.2 10168 1.6 CC2D1A CTCF MLLT1 RAD21 SMARCA4 DPF2 IKZF1 ZIC2 REST PKNOX1 EXO5 ENSG00000237899 RIMS3 RLF TRIT1 KCNQ4 GC01P040763
GH01J040761 Enhancer 0.3 Ensembl 0.7 -2.5 -2544 0.2 POLR2A GC01P040763 MIR30C1 NFYC
GH01J040770 Enhancer 0.4 Ensembl 0.4 +6.3 6256 0.2 CTCF SMC3 RAD21 GC01P040763 KCNQ4 NFYC
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC01P040763 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC01P040763 Gene

Genomic Locations for GC01P040763 Gene
chr1:40,763,845-40,764,039
(GRCh38/hg38)
Size:
195 bases
Orientation:
Plus strand

Genomic View for GC01P040763 Gene

Genes around GC01P040763 on UCSC Golden Path with GeneCards custom track

GC01P040763 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC01P040763 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC01P040763 Gene

ORGUL Member Location for GC01P040763 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC01P040763 Gene

Proteins for GC01P040763 Gene

Post-translational modifications for GC01P040763 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC01P040763 Gene

Domains & Families for GC01P040763 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC01P040763 Gene

Function for GC01P040763 Gene

Phenotypes From GWAS Catalog for GC01P040763 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC01P040763 Gene

Localization for GC01P040763 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC01P040763 Gene

Pathways & Interactions for GC01P040763 Gene

PathCards logo

SuperPathways for GC01P040763 Gene

No Data Available

Interacting Proteins for GC01P040763 Gene

Gene Ontology (GO) - Biological Process for GC01P040763 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC01P040763 Gene

Drugs & Compounds for GC01P040763 Gene

No Compound Related Data Available

Transcripts for GC01P040763 Gene

fRNAdb Secondary structures for GC01P040763 Gene

  • FR373993
  • FR510003

Alternative Splicing Database (ASD) splice patterns (SP) for GC01P040763 Gene

No ASD Table

Relevant External Links for GC01P040763 Gene

GeneLoc Exon Structure for
GC01P040763

No data available for mRNA/cDNA for GC01P040763 Gene

Expression for GC01P040763 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC01P040763 Gene

Orthologs for GC01P040763 Gene

No data available for Orthologs and Evolution for GC01P040763 Gene

Paralogs for GC01P040763 Gene

No data available for Paralogs for GC01P040763 Gene

Variants for GC01P040763 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC01P040763 Gene

Disorders for GC01P040763 Gene

No disorders were found for GC01P040763 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC01P040763 Gene

Publications for GC01P040763 Gene

  1. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  2. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S … Stadler PF (Nature biotechnology 2005) 1
  3. Identification of clustered microRNAs using an ab initio prediction method. (PMID: 16274478) Sewer A … Zavolan M (BMC bioinformatics 2005) 1

No data available for External Links for GC01P040763 Gene

Products for GC01P040763 Gene

Sources for GC01P040763 Gene

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