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Aliases for GC01P040233 Gene

Subcategory (RNA class) for GC01P040233 Gene

Y RNA

Quality Score for this RNA gene is

15

Aliases for GC01P040233 Gene

No Aliases found

ORGUL Members for GC01P040233 Gene

No data available for External Ids for GC01P040233 Gene

Summaries for GC01P040233 Gene

GeneCards Summary for GC01P040233 Gene

GC01P040233 is an RNA Gene, and is affiliated with the Y RNA class.

fRNAdb sequence ontologies for GC01P040233 Gene

  • Y RNA: Y RNAs are components of the Ro ribonucleoprotein particle (Ro RNP), in association with Ro60 and La proteins. The Y RNAs and Ro60 and La proteins are well conserved, but the function of the Ro RNP is not known. In humans the RNA component can be one of four small RNAs -- hY1, hY3, hY4 and hY5. These small RNAs are predicted to fold into a conserved secondary structure containing three stem structures. The largest of the four, hY1, contains an additional hairpin. This family includes a significant number of annotated pseudogenes and the model is expected to discriminate poorly between real and Y RNA related pseudogenes.

View fRNAdb secondary structures for GC01P040233

Additional gene information for GC01P040233 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC01P040233 Gene

Genomics for GC01P040233 Gene

GeneHancer (GH) Regulatory Elements for GC01P040233 Gene

Promoters and enhancers for GC01P040233 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J040232 Enhancer 0.7 ENCODE 600.7 -1.2 -1172 0.2 NFIB RELA CREM ZBED1 IKZF1 IKZF2 PKNOX1 TRIM22 CBFB SCRT2 GC01P040233 ZMPSTE24 ENSG00000231296 RLF RNU6-1237P
GH01J040183 Enhancer 1.1 Ensembl ENCODE 0.2 -50.8 -50842 11 SP1 CC2D1A CTCF CBFA2T2 GTF2F1 JUND TRIM24 RELA CREM PRDM1 PPT1 PABPC4 RLF ZMPSTE24 ENSG00000231296 TMCO2 SMAP2 CAP1 COL9A2 ENSG00000259943
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC01P040233 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC01P040233 Gene

Genomic Locations for GC01P040233 Gene
chr1:40,233,743-40,233,854
(GRCh38/hg38)
Size:
112 bases
Orientation:
Plus strand

Genomic View for GC01P040233 Gene

Genes around GC01P040233 on UCSC Golden Path with GeneCards custom track

GC01P040233 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC01P040233 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC01P040233 Gene

ORGUL Member Location for GC01P040233 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC01P040233 Gene

Proteins for GC01P040233 Gene

Post-translational modifications for GC01P040233 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC01P040233 Gene

Domains & Families for GC01P040233 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC01P040233 Gene

Function for GC01P040233 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC01P040233 Gene

Localization for GC01P040233 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC01P040233 Gene

Pathways & Interactions for GC01P040233 Gene

PathCards logo

SuperPathways for GC01P040233 Gene

No Data Available

Interacting Proteins for GC01P040233 Gene

Gene Ontology (GO) - Biological Process for GC01P040233 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC01P040233 Gene

Drugs & Compounds for GC01P040233 Gene

No Compound Related Data Available

Transcripts for GC01P040233 Gene

fRNAdb Secondary structures for GC01P040233 Gene

  • FR294172

Alternative Splicing Database (ASD) splice patterns (SP) for GC01P040233 Gene

No ASD Table

Relevant External Links for GC01P040233 Gene

GeneLoc Exon Structure for
GC01P040233

No data available for mRNA/cDNA for GC01P040233 Gene

Expression for GC01P040233 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC01P040233 Gene

Orthologs for GC01P040233 Gene

No data available for Orthologs and Evolution for GC01P040233 Gene

Paralogs for GC01P040233 Gene

No data available for Paralogs for GC01P040233 Gene

Variants for GC01P040233 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC01P040233 Gene

Disorders for GC01P040233 Gene

No disorders were found for GC01P040233 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC01P040233 Gene

Publications for GC01P040233 Gene

  1. Conserved features of Y RNAs: a comparison of experimentally derived secondary structures. (PMID: 10606662) Teunissen SW … Pruijn GJ (Nucleic acids research 2000) 1
  2. Ro ribonucleoproteins contribute to the resistance of Deinococcus radiodurans to ultraviolet irradiation. (PMID: 10766734) Chen X … Wolin SL (Genes & development 2000) 1
  3. Caenorhabditis elegans embryos contain only one major species of Ro RNP. (PMID: 7489501) Van Horn DJ … Wolin SL (RNA (New York, N.Y.) 1995) 1

No data available for External Links for GC01P040233 Gene

Products for GC01P040233 Gene

Sources for GC01P040233 Gene

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