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Aliases for GC01P038138 Gene

Subcategory (RNA class) for GC01P038138 Gene

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Quality Score for this RNA gene is

13.4

Aliases for GC01P038138 Gene

No Aliases found

ORGUL Members for GC01P038138 Gene

No data available for External Ids for GC01P038138 Gene

Summaries for GC01P038138 Gene

GeneCards Summary for GC01P038138 Gene

GC01P038138 is an RNA Gene, and is affiliated with the undefined RNA class.

fRNAdb sequence ontologies for GC01P038138 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for GC01P038138

Additional gene information for GC01P038138 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC01P038138 Gene

Genomics for GC01P038138 Gene

GeneHancer (GH) Regulatory Elements for GC01P038138 Gene

Promoters and enhancers for GC01P038138 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J038137 Enhancer 1.1 Ensembl ENCODE 600.7 -1.7 -1665 15.4 ZSCAN21 SP7 PRDM1 GLIS2 ZNF600 PRDM10 ZEB2 POLR2A ZNF629 PATZ1 GC01P038138 ENSG00000237749 ENSG00000228436 LINC01137 SNIP1 LINC02786 LOC105378654 GC01P038095
GH01J038125 Enhancer 0.9 FANTOM5 Ensembl ENCODE 0.4 -11.5 -11492 1.9 NR2F2 ZFHX2 KLF1 EGR2 POU3F1 C1orf122 GC01P038138 GC01P038095
GH01J038122 Enhancer 0.9 Ensembl ENCODE 0.4 -14.4 -14401 1.8 NCOA3 FOSL2 CREB1 ZNF600 ZIC2 ATF7 CTBP1 ATF2 DPF2 GATAD2B GC01P038138 GC01P038095
GH01J038105 Enhancer 0.7 Ensembl 0.3 -31.7 -31665 3 TRIM24 SMARCA4 IKZF1 PKNOX1 HDAC1 EP300 SCRT2 ZNF766 ZNF318 NR2C2 C1orf109 MIR3659HG GC01P038095 GC01P038138
GH01J038117 Enhancer 0.5 ENCODE 0.3 -20.5 -20546 0.3 MAFK SP1 RXRA YY1 ZBTB33 RAD21 HNF4A GC01P038095 GC01P038138 MIR3659HG
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC01P038138 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC01P038138 Gene

Genomic Locations for GC01P038138 Gene
chr1:38,138,166-38,138,286
(GRCh38/hg38)
Size:
121 bases
Orientation:
Plus strand

Genomic View for GC01P038138 Gene

Genes around GC01P038138 on UCSC Golden Path with GeneCards custom track

GC01P038138 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC01P038138 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC01P038138 Gene

ORGUL Member Location for GC01P038138 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC01P038138 Gene

Proteins for GC01P038138 Gene

Post-translational modifications for GC01P038138 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC01P038138 Gene

Domains & Families for GC01P038138 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC01P038138 Gene

Function for GC01P038138 Gene

Phenotypes From GWAS Catalog for GC01P038138 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC01P038138 Gene

Localization for GC01P038138 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC01P038138 Gene

Pathways & Interactions for GC01P038138 Gene

PathCards logo

SuperPathways for GC01P038138 Gene

No Data Available

Interacting Proteins for GC01P038138 Gene

Gene Ontology (GO) - Biological Process for GC01P038138 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC01P038138 Gene

Drugs & Compounds for GC01P038138 Gene

No Compound Related Data Available

Transcripts for GC01P038138 Gene

fRNAdb Secondary structures for GC01P038138 Gene

  • FR325902
  • FR190406

Alternative Splicing Database (ASD) splice patterns (SP) for GC01P038138 Gene

No ASD Table

Relevant External Links for GC01P038138 Gene

GeneLoc Exon Structure for
GC01P038138

No data available for mRNA/cDNA for GC01P038138 Gene

Expression for GC01P038138 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC01P038138 Gene

Orthologs for GC01P038138 Gene

No data available for Orthologs and Evolution for GC01P038138 Gene

Paralogs for GC01P038138 Gene

No data available for Paralogs for GC01P038138 Gene

Variants for GC01P038138 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC01P038138 Gene

Disorders for GC01P038138 Gene

No disorders were found for GC01P038138 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC01P038138 Gene

Publications for GC01P038138 Gene

  1. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen JS … Haussler D (PLoS computational biology 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  3. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S … Stadler PF (Nature biotechnology 2005) 1

No data available for External Links for GC01P038138 Gene

Products for GC01P038138 Gene

Sources for GC01P038138 Gene

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