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Aliases for GC01P033669 Gene

Subcategory (RNA class) for GC01P033669 Gene


Quality Score for this RNA gene is


Aliases for GC01P033669 Gene

No Aliases found

No data available for External Ids for GC01P033669 Gene

Summaries for GC01P033669 Gene

GeneCards Summary for GC01P033669 Gene

GC01P033669 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC01P033669 Gene

  • U1_snRNA: U1 is a small nuclear RNA (snRNA) component of the spliceosome (involved in pre-mRNA splicing). Its 5' end forms complementary base pairs with the 5' splice junction, thus defining the 5' donor site of an intron. There are significant differences in sequence and secondary structure between metazoan and yeast U1 snRNAs, the latter being much longer (568 nucleotides as compared to 164 nucleotides in human). Nevertheless, secondary structure predictions suggest that all U1 snRNAs share a 'common core' consisting of helices I, II, the proximal region of III, and IV.

View fRNAdb secondary structures for GC01P033669

Additional gene information for GC01P033669 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC01P033669 Gene

Genomics for GC01P033669 Gene

GeneHancer (GH) Regulatory Elements for GC01P033669 Gene

Promoters and enhancers for GC01P033669 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J033666 Enhancer 0.2 Ensembl 600.7 -1.6 -1619 0.4 GC01P033669 PIR59446 CSMD2
GH01J033684 Enhancer 0.2 Ensembl 0.4 +17.2 17181 2.4 ZSCAN20 GC01P033687 GC01P033669 CSMD2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC01P033669 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC01P033669 Gene

Genomic Locations for GC01P033669 Gene
165 bases
Plus strand

Genomic View for GC01P033669 Gene

Genes around GC01P033669 on UCSC Golden Path with GeneCards custom track

GC01P033669 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC01P033669 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC01P033669 Gene

ORGUL Member Location for GC01P033669 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC01P033669 Gene

Proteins for GC01P033669 Gene

Post-translational modifications for GC01P033669 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC01P033669 Gene

Domains & Families for GC01P033669 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC01P033669 Gene

Function for GC01P033669 Gene

Phenotypes From GWAS Catalog for GC01P033669 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC01P033669 Gene

Localization for GC01P033669 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC01P033669 Gene

Pathways & Interactions for GC01P033669 Gene

PathCards logo

SuperPathways for GC01P033669 Gene

No Data Available

Interacting Proteins for GC01P033669 Gene

Gene Ontology (GO) - Biological Process for GC01P033669 Gene


No data available for Pathways by source and SIGNOR curated interactions for GC01P033669 Gene

Drugs & Compounds for GC01P033669 Gene

No Compound Related Data Available

Transcripts for GC01P033669 Gene

fRNAdb Secondary structures for GC01P033669 Gene

  • FR249497
  • FR389709
  • FR135896
  • FR251069
  • FR005262

Alternative Splicing Database (ASD) splice patterns (SP) for GC01P033669 Gene

No ASD Table

Relevant External Links for GC01P033669 Gene

GeneLoc Exon Structure for

No data available for mRNA/cDNA for GC01P033669 Gene

Expression for GC01P033669 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC01P033669 Gene

Orthologs for GC01P033669 Gene

No data available for Orthologs and Evolution for GC01P033669 Gene

Paralogs for GC01P033669 Gene

No data available for Paralogs for GC01P033669 Gene

Variants for GC01P033669 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC01P033669 Gene

Disorders for GC01P033669 Gene

No disorders were found for GC01P033669 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC01P033669 Gene

Publications for GC01P033669 Gene

  1. NONCODE: an integrated knowledge database of non-coding RNAs. (PMID: 15608158) Liu C … Chen R (Nucleic acids research 2005) 1
  2. Two functionally distinct steps mediate high affinity binding of U1A protein to U1 hairpin II RNA. (PMID: 11297556) Katsamba PS … Laird-Offringa IA (The Journal of biological chemistry 2001) 1
  3. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  4. The RNA world of the nucleolus: two major families of small RNAs defined by different box elements with related functions. (PMID: 8797828) Balakin AG … Fournier MJ (Cell 1996) 1
  5. Crystal structure at 1.92 A resolution of the RNA-binding domain of the U1A spliceosomal protein complexed with an RNA hairpin. (PMID: 7984237) Oubridge C … Nagai K (Nature 1994) 1

No data available for External Links for GC01P033669 Gene

Products for GC01P033669 Gene

Sources for GC01P033669 Gene

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